BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA05RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig296 827 0.0
>3x_Contig296
Length = 1333
Score = 827 bits (417), Expect = 0.0
Identities = 417/417 (100%)
Strand = Plus / Plus
Query: 43 cttcctcacttgcaaattgtcatgttccatatatgatatgatgacacgcctaatgaactc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 cttcctcacttgcaaattgtcatgttccatatatgatatgatgacacgcctaatgaactc 976
Query: 103 tgtgagagaatatttgggttttatgtcggaaagcatccttaaagccttcgtaagtataac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 tgtgagagaatatttgggttttatgtcggaaagcatccttaaagccttcgtaagtataac 1036
Query: 163 agcatcaaaaatatcgttattggcttcaccagttttcttgaagagtgattgatctctata 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 agcatcaaaaatatcgttattggcttcaccagttttcttgaagagtgattgatctctata 1096
Query: 223 atttcttgcggtctctgcggagaatggtttcataggggtaggggatcccggtggtctgaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 atttcttgcggtctctgcggagaatggtttcataggggtaggggatcccggtggtctgaa 1156
Query: 283 cttctcaccagatagtacaagacatattatattgagtagcttttcattgattgttccctc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 cttctcaccagatagtacaagacatattatattgagtagcttttcattgattgttccctc 1216
Query: 343 caacgaagggattttctcgcatacaatcagtaaggtctcttgcatgtgatcacttaaagg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 caacgaagggattttctcgcatacaatcagtaaggtctcttgcatgtgatcacttaaagg 1276
Query: 403 gcatgctaacatatattcaagtagtcctctgtttagatattttgctaataatggacg 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 gcatgctaacatatattcaagtagtcctctgtttagatattttgctaataatggacg 1333
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6592
Number of Sequences: 1807
Number of extensions: 6592
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)