BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA06FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1499 0.0
>3x_Contig1788
Length = 28493
Score = 1499 bits (756), Expect = 0.0
Identities = 794/804 (98%), Gaps = 2/804 (0%)
Strand = Plus / Plus
Query: 87 tgctcaatgcactgacaggcaaaactaccaacggcacatagaaacagatcattagtagtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15686 tgctcaatgcactgacaggcaaaactaccaacggcacatagaaacagatcattagtagtc 15745
Query: 147 acgtgtatttatgcgggtaacactgttcacactggctcatctctgaacctttgatcaaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15746 acgtgtatttatgcgggtaacactgttcacactggctcatctctgaacctttgatcaaaa 15805
Query: 207 aaatttacgattttcaaaccaaattcaatatcatcatattctggtgaagtaagcttgaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15806 aaatttacgattttcaaaccaaattcaatatcatcatattctggtgaagtaagcttgaat 15865
Query: 267 ttggatctaatgagagttactcttagattgaataggttctggttgtattgtgtgtgtcct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866 ttggatctaatgagagttactcttagattgaataggttctggttgtattgtgtgtgtcct 15925
Query: 327 tgtgtggtccttgtgtacactggcatctattcaacggaaattgtacagtatgttgagagc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15926 tgtgtggtccttgtgtacactggcatctattcaacggaaattgtacagtatgttgagagc 15985
Query: 387 aggaaggtttagtctgagtcacgtccatgctaacgttttggcaagaagtccacttgtaca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15986 aggaaggtttagtctgagtcacgtccatgctaacgttttggcaagaagtccacttgtaca 16045
Query: 447 tgctgccagtataccgaccatgcaaaccagattccaaagtcaatctgtgaataataatgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16046 tgctgccagtataccgaccatgcaaaccagattccaaagtcaatctgtgaataataatgc 16105
Query: 507 gtctacaggggagaaattagctagccttagcgacgaacaggttgatgaatggttgaaagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16106 gtctacaggggagaaattagctagccttagcgacgaacaggttgatgaatggttgaaagt 16165
Query: 567 tattggatcgttagaagaagagttttcgcaacaagattataacccagctacgtcccttgc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16166 tattggatcgttagaagaagagttttcgcaacaagattataacccagctacgtcccttgc 16225
Query: 627 accaggtaaccaatctagaattaatatcttggagaaggctatggaattgaacatgcccag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 16226 accaggtaaccaatctagaattaatatcttggagaaggctatggaattgaacaagcccag 16285
Query: 687 ctttgagccaagtcaagagcaaataaatgaatggggaacgttgaagcaagttcccattcc 746
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 16286 ctttgagccaagtcaagagcaaataaatgaatgggaaacgttgaagcaagttcccattcc 16345
Query: 747 -atataacaggatccagttttacagcatgtaacgaatatgattatgagacacgggaaaag 805
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16346 aaaaaaacaggatccagttttacagcatgtaacgaatatgattatgagacacgggaaaag 16405
Query: 806 agtaagagctgagaagattctttcaagagcgttatttattgtgttctgtcaaacagggaa 865
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 16406 agaaagagctgagaagattctttcaagagcgttatatattgtgttctgtcaaacaaggaa 16465
Query: 866 ggacccggt-aaagttttgaaaga 888
|||||||| ||||||||||||||
Sbjct: 16466 agacccggtaaaagttttgaaaga 16489
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5999
Number of Sequences: 1807
Number of extensions: 5999
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)