BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA07FM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1715 1168 0.0
>3x_Contig1715
Length = 16241
Score = 1168 bits (589), Expect = 0.0
Identities = 627/636 (98%), Gaps = 3/636 (0%)
Strand = Plus / Minus
Query: 86 tgttgaaacaagaattcatcgccaaatatataccgaaagaatttgatatttcaaaggata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 tgttgaaacaagaattcatcgccaaatatataccgaaagaatttgatatttcaaaggata 1431
Query: 146 agatatttgtcacttctacctctttcacaccggacgaagatatctcagtattaatcggat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 agatatttgtcacttctacctctttcacaccggacgaagatatctcagtattaatcggat 1371
Query: 206 ccttcaagatatatgaaaattcattccaaaagtttgatcagactttgcctcgaatcttgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 ccttcaagatatatgaaaattcattccaaaagtttgatcagactttgcctcgaatcttgt 1311
Query: 266 gtttcatcactgggaagggcccattgcaagaaaagattgtaaaacaggtacaggatttca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 gtttcatcactgggaagggcccattgcaagaaaagattgtaaaacaggtacaggatttca 1251
Query: 326 aatgggaccgcgtccaggtcgaattcttatggctatcatcagaagattatcctaagctat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 aatgggaccgcgtccaggtcgaattcttatggctatcatcagaagattatcctaagctat 1191
Query: 386 taaggttgtgtgactatggggtatcgttacatacttcaagctcggggcttgatttaccta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 taaggttgtgtgactatggggtatcgttacatacttcaagctcggggcttgatttaccta 1131
Query: 446 tgaaaatccttgatatgttcggttctgggttacctgtcatctgtatgaattatcccgtat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 tgaaaatccttgatatgttcggttctgggttacctgtcatctgtatgaattatcccgtat 1071
Query: 506 tggacgaacttgttcaacagaatgttaatgggttgaaatttgcagatagacgtgagttgc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 tggacgaacttgttcaacagaatgttaatgggttgaaatttgcagatagacgtgagttgc 1011
Query: 566 atgaagctcttatattttccgtgaaagatgaacaggttcatcaggagatcaaaagagggg 625
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1010 atgaagctcttatattttcggtgaaagatgaacaggttcatcaggagatcaaaagaggtg 951
Query: 626 cccttagagaaagcanaaatagatggaattgaaagttgggaatcccgggttgtctggaat 685
||||||||||||||| |||||||||||| |||||||||||||| ||| |||||||| | |
Sbjct: 950 cccttagagaaagcaaaaatagatggaa-tgaaagttgggaat-ccgcgttgtctgaatt 893
Query: 686 gaagattattcataagtgattaaaattgcttcagct 721
||||||||||||||||||| ||||||||||||||||
Sbjct: 892 gaagattattcataagtga-taaaattgcttcagct 858
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8333
Number of Sequences: 1807
Number of extensions: 8333
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)