BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA07RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig911 799 0.0
>3x_Contig911
Length = 4722
Score = 799 bits (403), Expect = 0.0
Identities = 541/574 (94%), Gaps = 10/574 (1%)
Strand = Plus / Minus
Query: 44 cttgnattctcgttttccttcag-attctgttcacgtaagttaatgcactggacatcgct 102
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1136 cttgtattctcgttttccttcaggattctgttcacgtaagttaatgcactggacatcgct 1077
Query: 103 ccacttaaactactcttcatcgaaaccttactctcttgaccttctaattcttgcttgaac 162
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1076 ccacttaaactactcttcatcgaaaccttactctcttgaccttctaattcttccttgaac 1017
Query: 163 aacctataccattgctccaccactatctcatccacattacggaaccctctatacatttta 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1016 aacctataccattgctccaccactatctcatccacattacggaaccctctatacatgtca 957
Query: 223 gaacttaccatatacatactaggtttcgaatcagccgatggatacaaatatttcataccc 282
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gaacttaccatagacatactaggtttcgaatcagccgatggatacaaatatttcataccc 897
Query: 283 tcggattgtgcatcaatgatgcacacctggtttcctgaattgaaagccaaatgcgcattc 342
||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tcggagtgtgcagcaatgaggcacacctggtttcctgaattgaaagccaaatgcgcattc 837
Query: 343 aaaaacactacgatggacttcaacgcctctataagttgcttctcaccagaacttgcttcc 402
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 836 aaaaacactacgatggacttcaacgcctctataagttgcttctcaccagaacttccttcc 777
Query: 403 gaaccactaccataattgttgttgtcgtaatgctggacccattgattgatatgctggtat 462
|||||||||||| ||||||||| |||||| |||||||||| ||| ||| ||||||||||
Sbjct: 776 gaaccactacca-gattgttgtt-tcgtaa-gctggaccca-tgaatga-atgctggtat 722
Query: 463 caaccacaacaatgataatataatgcgtatcctctattttcttgattcttcgatttggtt 522
||||||||||| ||| || | || |||||||||||| |||||||| ||||||||||||||
Sbjct: 721 caaccacaacagtgagaagagaaggcgtatcctcta-tttcttgagtcttcgatttggtt 663
Query: 523 ccttgggacactggtttcatcgatggcatccattttaaccgctttctctttcaaagaaaa 582
|||||| ||||| || ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 662 ccttggaacact-gtatcagcgatggcatccattttaaccgcttcctctttcaaagaaaa 604
Query: 583 ggcctattaataattaaaaccctgatttgacaaa 616
|| |||||||||| ||||| |||||||| |||||
Sbjct: 603 gg-ctattaataa-taaaaacctgatttcacaaa 572
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7940
Number of Sequences: 1807
Number of extensions: 7940
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)