BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA08FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig653 688 0.0
3x_Contig886 250 4e-66
>3x_Contig653
Length = 2427
Score = 688 bits (347), Expect = 0.0
Identities = 384/395 (97%), Gaps = 1/395 (0%)
Strand = Plus / Plus
Query: 294 gtgtttgtcgtcatctacctatattggatttatgactctgtaatagaaaaaggcaaagaa 353
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 12 gtgtttgtcgtcatctacctattttttatttatgactctgtaatagaaaaaggcaaagaa 71
Query: 354 acgtcacaaaacatcatatcatcgctacagcattcgatggaaaatccagaattagcttga 413
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 acgtcacaaaacatcatagcatcgctacagcattcgatggaaaatccagaattagcttga 131
Query: 414 acggacagcttaagaagctttatcttccccgtcaattgccatcattgttcccatatcata 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 acggacagcttaagaagctttatcttccccgtcaattgccatcattgttcccatatcata 191
Query: 474 aggatcagctttatcatcttattacttttatcacgccattattaccattagcactctatt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aggatcagctttatcatcttattacttttatcacgccattattaccattagcactctatt 251
Query: 534 tttattttcatttcagtgaaatgatgatgaaaatcagaaaaaacacaaagaccaatgcca 593
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 252 tttattttcatttcagtgaaatgatgatgaaaatcagaaaaaacacaaagacaaatgcca 311
Query: 594 ttgcagttatttttttatacgtttcctttgtccattcattaagataccaattgtcattgt 653
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 312 ttgcagttatttttttatacgtttcctttgtccattcattaggataccaattgtcattgt 371
Query: 654 cttaccaat-tttagattttcttcgctttcgctac 687
||||| ||| | ||||| ||||||||| |||||||
Sbjct: 372 cttacgaatatatagatattcttcgctatcgctac 406
>3x_Contig886
Length = 4262
Score = 250 bits (126), Expect = 4e-66
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 85 atactactattatccaccactaattgataataatgttgaatgggattaatagtactatta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4137 atactactattatccaccactaattgataataatgttgaatgggattaatagtactatta 4196
Query: 145 ttgttataatttttactactaatttttttttgttctaatgatagaaaaaagcagcatgag 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4197 ttgttataatttttactactaatttttttttgttctaatgatagaaaaaagcagcatgag 4256
Query: 205 attcga 210
||||||
Sbjct: 4257 attcga 4262
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,263
Number of Sequences: 1807
Number of extensions: 16263
Number of successful extensions: 164
Number of sequences better than 1.0e-20: 2
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)