BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA08RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1183 0.0
>3x_Contig1468
Length = 9852
Score = 1183 bits (597), Expect = 0.0
Identities = 722/753 (95%), Gaps = 12/753 (1%)
Strand = Plus / Minus
Query: 44 cttgatgttgaagttgtattggttccaaatattggtttagaggcattgacactcggagtt 103
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1614 cttgatgttgaagttgtattggcaccaaatattggtttagaggcattgacactcggagtt 1555
Query: 104 gtagtcattgcattatttccagatagtccgaaattaaaagcgggctttgcatcggtcttt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 gtagtcattgcattatttccagatagtccgaaattaaaagcgggctttgcatcggtcttt 1495
Query: 164 tgttcaggttgtgtaccaaatgagaatccactcttgggttgagtgtctttattttgttgc 223
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1494 tgttcaggttgtgtaccaaatgagaatccactcttgggttgagtgtctttagcctgttgc 1435
Query: 224 gacccgccaaatagcgaagagctacttcctgctgctcctacggagccaaagccaccaaat 283
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 1434 gacccgccaaatagcgaagagctacttcctgc--cttctacggagccaaagccaccaaat 1377
Query: 284 gttggttttgctgcgcttgtattcgtggtgttgctgttgttattgttcgcattgctggca 343
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 gttggttttg--gcgcttgtattcgtggtgttgctgttgttattgttcgcattgctggca 1319
Query: 344 gcatcgtttgcgttaaaacctccaaaagcaggttttggtgcatcgcctgtaccagcagtt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 gcatcgtttgcgttaaaacctccaaaagcaggttttggtgcatcgcctgtaccagcagtt 1259
Query: 404 gtattagaggcaccaaacgaaaatggcgaagctgctggcttgactgcattagcgccctgt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 gtattagaggcaccaaacgaaaatggcgaagctgctggcttgactgcattagcgccctgt 1199
Query: 464 tgtgtattcataccaaagcctccgaatgcaggttttgtttgtccattgtcattggtagtg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 tgtgtattcataccaaagcctccgaatgcaggttttgtttgtccattgtcattggtagtg 1139
Query: 524 gtcgctccaaacgctg-aaatgcatttncctgctgcgtattagagctaccagcagctgaa 582
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1138 gtcgctccaaacgctgaaaatgcatttccctgctgcgtattagagctaccagcagctgaa 1079
Query: 583 ccgaaacttgcaaaagcattgccactggtctggccttcagtattgccaaagagagaagaa 642
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 1078 ccgaaacttgcaaaagcattgccactggtctggcctccagtattgccaaagagagaggaa 1019
Query: 643 gcacctgtgctggtacttggtgtttcctgtggtagataccattttgtcctgatccagtac 702
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1018 gcacctgtgctggtac-tggtgtttcctgtggtagata-cattttgtcctgatccagtac 961
Query: 703 ccgcaaaacaaattgaatttgctgttcccacggaatgcatttcc-cgctgttgaaaaatt 761
| || |||||||||| | ||||||||||||| | | |||||||| |||||| ||||| ||
Sbjct: 960 cggc-aaacaaattggaattgctgttcccaccggaagcatttccgcgctgtagaaaagtt 902
Query: 762 ggaaaggtggggtttggattgaaaactcatttt 794
| || |||||||||| |||| |||||||||||
Sbjct: 901 g--aaagtggggtttgaattg-aaactcatttt 872
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7429
Number of Sequences: 1807
Number of extensions: 7429
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)