BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA09FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1578 0.0
>3x_Contig1786
Length = 33838
Score = 1578 bits (796), Expect = 0.0
Identities = 828/835 (99%), Gaps = 3/835 (0%)
Strand = Plus / Plus
Query: 83 tacaacctgtctgtttcttttctttttcttgatactcaggatacctccaacaggattgag 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24306 tacaacctgtctgtttcttttctttttcttgatactcaggatacctccaacaggattgag 24365
Query: 143 aagcggattttcaaactccccgcgattctttccgaacatcatgcatttgcgagggtcaag 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24366 aagcggattttcaaactccccgcgattctttccgaacatcatgcatttgcgagggtcaag 24425
Query: 203 aacaagacgggacatgtaggacaagtgagacaagacaagatgccaataggcttttttttt 262
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24426 aacaagacgggacaagtaggacaagtgagacaagacaagatgccaataggcttttttttt 24485
Query: 263 cttttgtcctttttcttgctgctgagagataacagccgaaaagcagcatggggataaagg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24486 cttttgtcctttttcttgctgctgagagataacagccgaaaagcagcatggggataaagg 24545
Query: 323 acaagtggcaagaaagggacattcggaagagacagggtcgggacaaggacaggaaagaaa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24546 acaagtggcaagaaagggacattcggaagagacagggtcgggacaaggacaggaaagaaa 24605
Query: 383 agtgcgatccttttggggccaaatggccaaatggacgtttgaccccctccgggttgacag 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24606 agtgcgatccttttggggccaaatggccaaatggacgtttgaccccctccgggttgacag 24665
Query: 443 aagaacacgaaggacatttttccgtttccaatttgttccgaaaccctggtggcgttttgt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24666 aagaacacgaaggacatttttccgtttccaatttgttccgaaaccctggtggcgttttgt 24725
Query: 503 ctaagccatttctcaccatgtcatgcaaaaaaattactcttaagagaaaaaatcaggttt 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24726 ctaagccatttctcaccatgtcatgcaaaaaaattactcttaagagaaaaaatcaggttt 24785
Query: 563 tccttttttgtttctttttcttttagagtctcactggaataccggaggagcgcgacgtat 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24786 tccttttttgtttctttttcttttagagtctcactggaataccggaggagcgcgacgtat 24845
Query: 623 cctgatgtaacatgtaactgacaaaaatctataccttacgttaccctgctgatgcggctg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24846 cctgatgtaacatgtaactgacaaaaatctataccttacgttaccctgctgatgcggctg 24905
Query: 683 gcttcttaaaaatttgtctctttactttttgacctangggcaactagaaagacaagagtc 742
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 24906 gcttcttaaaaatttgtctctttactttttgacctaggggcaactagaaagacaagagtc 24965
Query: 743 gggagaggagatttgggatgactgagcgccacgtgattgatgtgccaaaatcaaaagaat 802
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24966 gggagaggagatttgggaggactgagcgccacgtgattgaggtgccaaaatcaaaagaa- 25024
Query: 803 taatc-gcattggttcctggtttgatgttgggaagtagataggcgatgcgagggatttca 861
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25025 taatcggcattggttcctggtttgatgttgggaagtagataggcgatgcgagggatttca 25084
Query: 862 catcacgtggattcaattaactcatttttttttgtttttcagattcagttttttc 916
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 25085 catcacgtggattcaattaactca-ttttttttgtttttcagattcagttttttc 25138
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8890
Number of Sequences: 1807
Number of extensions: 8890
Number of successful extensions: 142
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)