BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA11FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig791 1179 0.0
>3x_Contig791
Length = 3989
Score = 1179 bits (595), Expect = 0.0
Identities = 641/655 (97%), Gaps = 1/655 (0%)
Strand = Plus / Minus
Query: 85 atcagatccatatttcagcacaatggtatcgagggccgatatcgttaaaagtatacccta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3606 atcagatccatatttcagcacaatggtatcgagggccgatatcgttaaaagtatacccta 3547
Query: 145 tcttgtgttgggaacaccctctactttattcgaactaaaagacaagaagttcacaatacc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3546 tcttgtgttgggaacaccctctactttattcgaactaaaagacaagaagttcacaatacc 3487
Query: 205 cagcaatattcctatttgagaaagccaacagttgcatgatatcgttgaagcaggcttact 264
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3486 cagcaatattccgaacggagaaagccaacagttgcatgatatcgttgaagcaggcttact 3427
Query: 265 ttacttgcaccttcaaattagagtggaatatcttaaaaaacatgttaccaccagtacact 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3426 ttacttgcaccttcaaattagagtggaatatcttaaaaaacatgttaccaccagtacact 3367
Query: 325 aaaagtagcatttttgacattgattcaaagtaaacttcgagattatagtaatttcgtcaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3366 aaaagtagcatttttgacattgattcaaagtaaacttcgagattatagtaatttcgtcaa 3307
Query: 385 caatttctcatcccacttacatccactcgatccattatgttttacatatcaacacctcta 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306 caatttctcatcccacttacatccactcgatccattatgttttacatatcaacacctcta 3247
Query: 445 tcctgaagtactaaaactaaggacatatatggaatatattgaaaactttgaaaaaagcag 504
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3246 tcctgaagtactaaaactaaggacatatatggaatatattgataactttgaaaaaagcag 3187
Query: 505 tgcagagggattactatctgtatgccagttacaaaaaagtaatggtgatccagtactcga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3186 tgcagagggattactatctgtatgccagttacaaaaaagtaatggtgatccagtactcga 3127
Query: 565 gaaatttgcatctgatgcgttagagcgtcttttacaaccctacatgaagaacatatgcga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3126 gaaatttgcatctgatgcgttagagcgtcttttacaaccctacatgaagaacatatgcga 3067
Query: 625 ttggttgattgatggaaaactggattcaaatgttagtagtgactttttttgttcaaaatg 684
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3066 ttggttgattgatggaaaactggattcaaatgttagtagtgac-ttttttgttcaaaatg 3008
Query: 685 acgagaaagaacattggggattggtattctttgcacagaaaaattcaaattttat 739
|||||||||||| | ||||||||||||||| ||||||||| | |||| |||||
Sbjct: 3007 acgagaaagaaccattgggattggtattcttgccacagaaaattccaaaatttat 2953
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7887
Number of Sequences: 1807
Number of extensions: 7887
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)