BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC38ZA11RM1.SCF screened BAC_end (920 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig656 1063 0.0 >3x_Contig656 Length = 1941 Score = 1063 bits (536), Expect = 0.0 Identities = 586/599 (97%), Gaps = 3/599 (0%) Strand = Plus / Plus Query: 140 gaaacagtcaacaaaatctatggagttgatttcttctgtctagatagtaatcgatgggat 199 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10 gaaagagtcaacaaaatctatggagttgatttcttctgtctagatagtaatcgatgggat 69 Query: 200 ttcgttgagttctattttatcggatttccaatcataccagaagaagaatatgcaagctct 259 |||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| Sbjct: 70 ttcgttgagttcgattctaacggatttccaatcataccagaagaagaatatgcaagctct 129 Query: 260 tccaatcaacagcaacagcacccgtgccatgatttgaagaaattactatcgaacggatca 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 tccaatcaacagcaacagcacccgtgccatgatttgaagaaattactatcgaacggatca 189 Query: 320 ttctattatagttccgatttcgatctaacatctttactacagtctagaggtctcaaccag 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 190 ttctattatagttccgatttcgatctaacatctttactacagtctagaggtctcaaccag 249 Query: 380 cattcgttatccttcgataattaccaagaagagtacatgtggaattcctttttaatgcaa 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 cattcgttatccttcgataattaccaagaagagtacatgtggaattcctttttaatgcaa 309 Query: 440 gaaatcatcacatttagaaaccatttggacgataaagccaagcaaataatggatgatgaa 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 310 gaaatcatcacatttagaaaccatttggacgataaagccaagcaaataatggatgatgaa 369 Query: 500 ggattcttaacgacagtgatcagaggttttgctgaaactttcccatcatatatcggcaga 559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 370 ggattcttaacgacagtgatcagaggttttgctgaaactttcccatcatatatcggcaga 429 Query: 560 atgcccgtcaatttaactatgatatcaaaacaatcttggaaaagagcgggaacaagattt 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 430 atgcccgtcaatttaactatgatatcaaaacaatcttggaaaagagcgggaacaagattt 489 Query: 620 aatgttagaggtattgatgacgatgcaaatgtagcanacttttgtg-aactg-atttatt 677 ||||||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||| Sbjct: 490 aatgttagaggtattgatgacgaggcaaatgtagcaaacttttgtgaaactgaatttatt 549 Query: 678 atgtattcagagaaatactgctttgctgtgacagaattaaga-gaagtgtccctgtttt 735 |||||||||||| ||||||||||||||||||||||| | ||| ||||||| |||||||| Sbjct: 550 atgtattcagaggaatactgctttgctgtgacagaaattagaggaagtgtacctgtttt 608 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8210 Number of Sequences: 1807 Number of extensions: 8210 Number of successful extensions: 55 Number of sequences better than 1.0e-20: 1 length of query: 920 length of database: 10,358,551 effective HSP length: 16 effective length of query: 904 effective length of database: 10,329,639 effective search space: 9337993656 effective search space used: 9337993656 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)