BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC38ZA12FM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1674                                                        1174   0.0  

>3x_Contig1674 
          Length = 12281

 Score = 1174 bits (592), Expect = 0.0
 Identities = 707/732 (96%), Gaps = 10/732 (1%)
 Strand = Plus / Plus

                                                                        
Query: 85   tttctgcaattcatgcagctcatcttgcatggagaaaccccactatctgaagcaattcaa 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981  tttctgcaattcatgcagctcatcttgcatggagaaaccccactatctgaagcaattcaa 1040

                                                                        
Query: 145  ggttgaagaaccactgtttggaacatacacacataacagcgtaaagaaataagtcacgaa 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 ggttgaagaaccactgtttggaacatacacacataacagcgtaaagaaataagtcacgaa 1100

                                                                        
Query: 205  tgtctcaggcattgcattactcgagtcgggtattgaagcgatactcgtttctgaagacag 264
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 tgtctcaggcattgcagtactcgagtcgggtattgaagcgatactcgtttctgaagacag 1160

                                                                        
Query: 265  ataagaactttattcgagctgcattacaatcaccaaatgcacagttcttaccataccatg 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 ataagaactttattcgagctgcattacaatcaccaaatgcacagttcttaccataccatg 1220

                                                                        
Query: 325  actactatccattttgtcataaatctgatatgagcaagctatggaagttcgatagatcca 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 actactatccattttgtcataaatctgatatgagcaagctatggaagttcgatagatcca 1280

                                                                        
Query: 385  atgtctcacatcaacctatactaaatacgttccttaaccagcataagccgagagagttgg 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 atgtctcacatcaacctatactaaatacgttccttaaccagcataagccgagagagttgg 1340

                                                                        
Query: 445  tgtacatgggattagtcccagcaaatactgcatctaatgagtccactttcaggtataaga 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 tgtacatgggattagtcccagcaaatactgcatctaatgagtccactttcaggtataaga 1400

                                                                        
Query: 505  agtgtgagggtacgcccttgtttgcaattgacgtaacacaccacgagcatgtgatcctga 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 agtgtgagggtacgcccttgtttgcaattgacgtaacacaccacgagcatgtgatcctga 1460

                                                                        
Query: 565  c-acaacgaagt-atttaatgccaggattttcgacatttcaatgatttggctgtagacga 622
            | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 caacaacgaagtcattaaatgccaggattttcgacatttcaatgatttggctgtagacga 1520

                                                                        
Query: 623  atcgtcatta-tatcttttagg-aaatgatgctacactggctttggactcataaatattg 680
            |||||||||| |||||||  || |||||||||||||||||||| | ||||||||||||||
Sbjct: 1521 atcgtcattattatctttagggaaaatgatgctacactggcttggaactcataaatattg 1580

                                                                        
Query: 681  ttccatgtgtgggtcatgaaaatgaaatcatttgcgtgtgggggggcaattacattgtac 740
            |||||||||| ||||||||||||||| ||| |||||||| || || ||||||||||||||
Sbjct: 1581 ttccatgtgt-ggtcatgaaaatgaagtca-ttgcgtgt-ggtggtcaattacattgtac 1637

                                                                        
Query: 741  caattcatttttgttcctcgaatgggaaggattcagtaacgttttctttccaagaacaaa 800
            ||| ||| | |||||||||||||||| |||| |||||||||||| ||| ||||||||| |
Sbjct: 1638 caa-tcaatcttgttcctcgaatggg-agga-tcagtaacgtttccttcccaagaacaga 1694

                        
Query: 801  cccagtattcat 812
            ||||||| ||||
Sbjct: 1695 cccagtagtcat 1706


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5916
Number of Sequences: 1807
Number of extensions: 5916
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)