BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZA12RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1287 0.0
>3x_Contig1416
Length = 10161
Score = 1287 bits (649), Expect = 0.0
Identities = 712/732 (97%), Gaps = 1/732 (0%)
Strand = Plus / Minus
Query: 42 gcttgtcccactacctggtgtattgtacaaggtttcatttgagagagattctattataca 101
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2766 gcttgtcccactacctggtgtatcgtacaaggtttcatttgagagagattctattataca 2707
Query: 102 tgtgctatctgagttcaaacgaaataattcattcaagaataatcatctattggacaaaat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2706 tgtgctatctgagttcaaacgaaataattcattcaagaataatcatctattggacaaaat 2647
Query: 162 caacacggctattgctcagaacgaaatagtagtcgataattcagttgtgaattcatgcaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2646 caacacggctattgctcagaacgaaatagtagtcgataattcagttgtgaattcatgcaa 2587
Query: 222 acagttccataagaagtacggctctgataatagcaataatgacgcagaagttcagatgta 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 acagttccataagaagtacggctctgataatagcaataatgacgcagaagttcagatgta 2527
Query: 282 catagttcttttaccctttgaagccgtgaataactctgttggagctgcttcaagaataac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 catagttcttttaccctttgaagccgtgaataactctgttggagctgcttcaagaataac 2467
Query: 342 tgcaattcaggtggaagatgacaccattacaattacgttcaaatcagtcgcaagagttga 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 tgcaattcaggtggaagatgacaccattacaattacgttcaaatcagtcgcaagagttga 2407
Query: 402 aaacaaacaacctctattgaatatgcaacatagtttatggaaatccagcatcctagaaat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 aaacaaacaacctctattgaatatgcaacatagtttatggaaatccagcatcctagaaat 2347
Query: 462 tgacgatcgctcagaactacggacctgngatcataaaagcattaacaaaagcattttgag 521
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2346 tgacgatcgctcagaactacggacctgggatcataaaagcattaacaaaagcattttgag 2287
Query: 522 tttcgtgaagatattttacgacacagaccaaattatcaaagacttcaaatcaaaatactc 581
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 2286 tttcgtgaagatattttacgacacagacaaaataatcaaagacttcaaatcaaaatactc 2227
Query: 582 attagcatccaagagatcaggtgatatagattctaggggtctatatctttctcccttagc 641
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2226 attagcatccaagagatcaggtgatatagattctagggtcttatatctttctcccttagc 2167
Query: 642 gaacactcttttcatgcagttaaatggttctcacttttaacaggtctgggaaattattga 701
||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||
Sbjct: 2166 gaacactcttttcatgcagttaaatgggtctcac-tttaacaagtcttggaaattattga 2108
Query: 702 aagcttatttagagcaactcactgtgcttgaaaaggattatgaacactgccttggattag 761
| |||||| |||||||||||||||||||||||| | ||||||| |||| ||| |||||
Sbjct: 2107 aggcttatctagagcaactcactgtgcttgaaaggaattatgacacctgctttgaattag 2048
Query: 762 tttcaatgatgg 773
||||||||||||
Sbjct: 2047 tttcaatgatgg 2036
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7829
Number of Sequences: 1807
Number of extensions: 7829
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)