BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB01FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1783 1489 0.0
>3x_Contig1783
Length = 22123
Score = 1489 bits (751), Expect = 0.0
Identities = 821/838 (97%), Gaps = 5/838 (0%)
Strand = Plus / Plus
Query: 87 gataatttctggtgtagcagcactgcccaaaacttctttgatagccaacaacaagtattt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8854 gataatttctggtgtagcagcactgcccaaaacttctttgatagccaacaacaagtattt 8913
Query: 147 tccgacgatatcatattgtgctggttcaacttgtaaagcacggtgcttttggccgatttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8914 tccgacgatatcatattgtgctggttcaacttgtaaagcacggtgcttttggccgatttc 8973
Query: 207 attcacggcaggcaataagacggacaagtcatcaatgttcttagcagcagccaaaacggt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8974 attcacggcaggcaataagacggacaagtcatcaatgttcttagcagcagccaaaacggt 9033
Query: 267 cattgccaatgcggtgggttgtctacccttcttttgattcactctgttgaaagtgttcaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9034 cattgccaatgcggtgggttgtctacccttcttttgattcactctgttgaaagtgttcaa 9093
Query: 327 aaggacagggttttcagaaagcatgttgttgtagaagattttggtgatggtaacaccatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9094 aaggacagggttttcagaaagcatgttgttgtagaagattttggtgatggtaacaccatg 9153
Query: 387 ttgttctagtactggcacggtggccttcacgatatttttcgtattaacggacagcataat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9154 ttgttctagtactggcacggtggccttcacgatatttttcgtattaacggacagcataat 9213
Query: 447 tgatagcgatgagcttgaatttaaagggtatagggtacactttgaaatagagatatattt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9214 tgatagcgatgagcttgaatttaaagggtatagggtacactttgaaatagagatatattt 9273
Query: 507 cactggtgaggggagagaagttaacacaatgaatgtacaatattatactacttgtccaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9274 cactggtgaggggagagaagttaacacaatgaatgtacaatattatactacttgtccaaa 9333
Query: 567 gcgatgaactcaacgagaacaccgattagattcaactatccatgcatatatatacttttt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9334 gcgatgaactcaacgagaacaccgattagattcaactatccatgcatatatatacttttt 9393
Query: 627 ctcgaaccaagctgatggactgaaagaaactgttcgctactacagatgaaatctccttcc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9394 ctcgaaccaagctgatggactgaaagaaactgttcgctactacagatgaaatctccttcc 9453
Query: 687 aacggttcgtgggcatgaatatcgtagctacactatactcataaa-cttaagtataccct 745
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 9454 aacggttcgtgggcatgaatatcgtagctacactatactcataaaccttaggtataccct 9513
Query: 746 atcgtgccatattaagaccccaagtttcaacngatgtaatgttagtaagaag-aaaaata 804
||||||||||| ||||||||||||| ||||| ||||||||||||||| || | |||||||
Sbjct: 9514 atcgtgccataataagaccccaagtatcaacggatgtaatgttagtaggaggaaaaaata 9573
Query: 805 atcatccaatcatttccagattttaataagcaaactaagcaagac-atggtagaatttat 863
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||
Sbjct: 9574 atcatccaatcatttccagatattaataagcaaactaagcaagacaatggtagaatatat 9633
Query: 864 ggagacttggctatgaaccgagggctgtaaattgtaaggccaagattgaccaccggaa 921
|||||||||||||| ||||| |||||||||||||| |||||||| ||| ||||||||
Sbjct: 9634 -gagacttggctatg-accgatggctgtaaattgtagggccaagactgagcaccggaa 9689
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6181
Number of Sequences: 1807
Number of extensions: 6181
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)