BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB01RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1713 1445 0.0
>3x_Contig1713
Length = 18539
Score = 1445 bits (729), Expect = 0.0
Identities = 772/784 (98%), Gaps = 2/784 (0%)
Strand = Plus / Plus
Query: 45 cttattaaaggtgtcgttatagataaggatttctctcatcctcaaatgcccaaatcatta 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12086 cttattaaaggtgtcgttatagataaggatttctctcatcctcaaatgcccaaatcatta 12145
Query: 105 gaaggcgatttgaagttggctattctaacttgccccttcgaacctccaaaaccaaagacg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12146 gaaggcgatttgaagttggctattctaacttgccccttcgaacctccaaaaccaaagacg 12205
Query: 165 aaacataaattggatatttcaaacgttaaagaattcgaactgttacagaagtacgaattg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12206 aaacataaattggatatttcaaacgttaaagaattcgaactgttacagaagtacgaattg 12265
Query: 225 gataaattcaaagagatgatcgatctagtcaagaaatcaggtgctaacgttgtcatctgc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12266 gataaattcaaagagatgatcgatctagtcaagaaatcaggtgctaacgttgtcatctgc 12325
Query: 285 caatgggggttcgatgatgaggctaaccatttactcttgcaaaacgaattaccagctgtt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12326 caatgggggttcgatgatgaggctaaccatttactcttgcaaaacgaattaccagctgtt 12385
Query: 345 agatgggttggaggtcaagaattagaattgattgccattgccaccaatggtcgcattgta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12386 agatgggttggaggtcaagaattagaattgattgccattgccaccaatggtcgcattgta 12445
Query: 405 ccaagattccaagatttatctgaagacaagttgggtacttgcgggaaaatatacgaaatg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12446 ccaagattccaagatttatctgaagacaagttgggtacttgcgggaaaatatacgaaatg 12505
Query: 465 gagttcggtaccactaaggatcgtatgttagtcatcgaagaatgtgccaactccaagact 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12506 gagttcggtaccactaaggatcgtatgttagtcatcgaagaatgtgccaactccaagact 12565
Query: 525 gtcacatgtttcctacgtgggtccaacagaatgattgtagatgaggctaaacgtgcttta 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12566 gtcacatgtttcctacgtgggtccaacagaatgattgtagatgaggctaaacgtgcttta 12625
Query: 585 catgattccctatgtgtggtacgtaatttgatccgtgattctagagttgtgtacggtggt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12626 catgattccctatgtgtggtacgtaatttgatccgtgattctagagttgtgtacggtggt 12685
Query: 645 ggtgccgcagaagtaacaatgtccttggctgtatcagatgaagctgnacaac-acgtggt 703
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 12686 ggtgccgcagaagtaacaatgtccttggctgtatcagatgaagctgacaaacaacgtggt 12745
Query: 704 attgaccaatacgcttttcgtgcatttctcaaacgctttggatcaaatcccaatgatttt 763
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12746 attgaccaatacgctttccgtgca-ttctcaaacgctttggatcaaatcccaatgatttt 12804
Query: 764 ggctgaaaactcaggtctggatccaatcgaaactttttccctatggaaaattaaccaatt 823
|||||||||||||||||||||||||||||||||| | ||||||| ||| | ||| |||||
Sbjct: 12805 ggctgaaaactcaggtctggatccaatcgaaactctatccctattgaagagtaaacaatt 12864
Query: 824 gaaa 827
||||
Sbjct: 12865 gaaa 12868
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,134
Number of Sequences: 1807
Number of extensions: 12134
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)