BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB02RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1493 1507 0.0
>3x_Contig1493
Length = 12243
Score = 1507 bits (760), Expect = 0.0
Identities = 840/860 (97%), Gaps = 5/860 (0%)
Strand = Plus / Minus
Query: 45 ctttttttgtttccagagtttcccgtaatttacaatcgaaagatgagtggaaagaagacc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 ctttttttgtttccagagtttcccgtaatttacaatcgaaagatgagtggaaagaagacc 1066
Query: 105 aaatctggtaaagccaatcagaataagaaacaagaggttgttcaagatgaacgtttacaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 aaatctggtaaagccaatcagaataagaaacaagaggttgttcaagatgaacgtttacaa 1006
Query: 165 gcgattgttttgactgactcgtttgagactaggtttatgcctttgacttcggtgaaacca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gcgattgttttgactgactcgtttgagactaggtttatgcctttgacttcggtgaaacca 946
Query: 225 agatgtttgttgccgttggccaacattcccttgattgaatatactttggagttcttagct 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 agatgtttgttgccgttggccaacattcccttgattgaatatactttggagttcttagct 886
Query: 285 aaggccggagtcaacgaagtttatctgatttgtgcatcgcatggtgaacagatccaggaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 aaggccggagtcaacgaagtttatctgatttgtgcatcgcatggtgaacagatccaggaa 826
Query: 345 tatatcgatcagtccaaatggagtttaccatgggctccgtttaaggtgaataccatcatg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tatatcgatcagtccaaatggagtttaccatgggctccgtttaaggtgaataccatcatg 766
Query: 405 tcgctagagtccagatctgttggagatgcaatgagagatgtcgataaccgtgggctaatt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tcgctagagtccagatctgttggagatgcaatgagagatgtcgataaccgtgggctaatt 706
Query: 465 accggtgatttcgtacttgttagtggtgatttggtgactaatatggactttgaaaaggct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 accggtgatttcgtacttgttagtggtgatttggtgactaatatggactttgaaaaggct 646
Query: 525 ttagatattcataaacaaaggagaaaggctgataaggatcatattgtcactatgtgccta 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttagatattcataaacaaaggagaaaggctgataaggatcatattgtcactatgtgccta 586
Query: 585 agtaaagcgactcagtttcataagacaaggtctcatgaaccagcaacgttcatttttgat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agtaaagcgactcagtttcataagacaaggtctcatgaaccagcaacgttcatttttgat 526
Query: 645 aagtctaatgatagatgtatttactaccaggatatcccattggctagctctagag-ataa 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 525 aagtctaatgatagatgtatttactaccaggatatcccattggctagctctagagaaaaa 466
Query: 704 actaccattgatattgatcctgaacttctggaaggtgttgacgagtttgtgttacgcaac 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 actaccattgatattgatcctgaacttctggaaggtgttgacgagtttgtgttacgcaac 406
Query: 764 gatttgattgattgccatgtagatatctgttcttcctatgtccctgcttttttcc-agag 822
||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||||
Sbjct: 405 gatttgattgattgccatgtagatatctgttctcctcatgtccctgctattttccaagag 346
Query: 823 attttcgattaccatttctggaaaaga-tttttgttaga-gtgtgcttttttatgatttg 880
| |||||||||||| |||| || |||| |||||||||| ||||||||| | |||||||
Sbjct: 345 aatttcgattaccaattcttgagaagagattttgttagaggtgtgctttctagtgatttg 286
Query: 881 tggaa-aaacatatttacgg 899
| ||| |||||||| |||||
Sbjct: 285 ttgaagaaacatatctacgg 266
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6552
Number of Sequences: 1807
Number of extensions: 6552
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)