BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB03RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1227 0.0
>3x_Contig1786
Length = 33838
Score = 1227 bits (619), Expect = 0.0
Identities = 705/729 (96%), Gaps = 4/729 (0%)
Strand = Plus / Plus
Query: 44 ctttcgtgttctatttataaattgatgtgaaaggagtagaaccttattcttttatatttg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11858 ctttcgtgttctatttataaattgatgtgaaaggagtagaaccttattcttttatatttg 11917
Query: 104 attgttgtaaatatagtgagaagtttttatcgtataataatatgaaatgctgaaaatata 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11918 attgttgtaaatatagtgagaagtttttatcgtataataatatgaaatgctgaaaatata 11977
Query: 164 atgttacaagaatagaacaaacaaaacaatgcaaggttgattatgggtcttgggtccatt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11978 atgttacaagaatagaacaaacaaaacaatgcaaggttgattatgggtcttgggtccatt 12037
Query: 224 tccatgtaccagtaaatgcatgatgcacatatccctttttaaa-gtccgtagtatgtaga 282
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 12038 tccatgtaccagtaaatgcatgatgcacatatccctttttaaaagtccgtagtatgtaga 12097
Query: 283 gaattgaagaaatgcttcggtaaaagtgctacatctccgtaaagcaaagggtattcgagt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12098 gaattgaagaaatgcttcggtaaaagtgctacatctccgtaaagcaaagggtattcgagt 12157
Query: 343 agagtgaaattttcccatccaacaggtgacgtgggcaacttgattccaagcaaattatct 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12158 agagtgaaattttcccatccaacaggtgacgtgggcaacttgattccaagcaaattatct 12217
Query: 403 cctatgggataattctcgagttttgaaattaaatctaacggtttgttgggatccagaaca 462
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12218 cctaggggataattctcgagttttgaaattaaatctaacggtttgttgggatccagaaca 12277
Query: 463 cacatatgtttgttattgcagataacctcgttgcttgaaccctgaatatgatcactgaag 522
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 12278 cacatatgtttgttattgcagagaacctcgttgcttgaaccctgaatatgatcactgaag 12337
Query: 523 ttttcgatgtaccactggttaatagttcggaaaaagctatctgtgaatgatgccggacca 582
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 12338 ttttcgatgtaccactggttaatagttcggaaaaagctatctgtgaatgaggccggacca 12397
Query: 583 gtccattctatgataccctcataccaattagcagaatccttcgacatgttatangcaggt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12398 gtccattctatgataccctcataccaattagcagaatccttcgacatgttataggcaggt 12457
Query: 643 tgaacgtcgaaaaagttcttgt-acccatttgggaagtcaat-cgttggttgatggatca 700
||||||||||||| |||||||| ||||||| || |||||||| ||||||| |||||||||
Sbjct: 12458 tgaacgtcgaaaaggttcttgtaacccattgggaaagtcaatacgttggtggatggatca 12517
Query: 701 tatntattcaatgccagatcagcttttttttgaacgacctctacaaacattgaatgaacc 760
|| || |||||| ||||||||| | ||| |||||| |||||||||| || ||| |||
Sbjct: 12518 tagtaatacaatgcaagatcagctatctttgcaacgacatctacaaacaatggatg-acc 12576
Query: 761 tggtctact 769
|||||||||
Sbjct: 12577 tggtctact 12585
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8027
Number of Sequences: 1807
Number of extensions: 8027
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)