BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC38ZB04RM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1764                                                        1358   0.0  

>3x_Contig1764 
          Length = 22510

 Score = 1358 bits (685), Expect = 0.0
 Identities = 769/788 (97%), Gaps = 7/788 (0%)
 Strand = Plus / Minus

                                                                         
Query: 53    aaaaaaagtgttgtgatatgtcaaagagtattcaggaaatggtgcatttcaacaggtttc 112
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12848 aaaaaaagtgttgtgatatgtcaaagagtattcaggaaatggtgcatttcaacaggtttc 12789

                                                                         
Query: 113   aattgagtttatggtattagatcagctctgtaatgctaaaaaattcagaaattgtgttag 172
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12788 aattgagtttatggtattagatcagctctgtaatgctaaaaaattcagaaattgtgttag 12729

                                                                         
Query: 173   aaggagtttcataacggatatggatgattaaatctgccaggagcggggtgcgtgtcagat 232
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12728 aaggagtttcataacggatatggatgattaaatctgccaggagcggggtgcgtgtcagat 12669

                                                                         
Query: 233   ttatcacttcttatataaaaaaactagctttcgaggatgcgtcctgttccctgctactct 292
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12668 ttatcacttcttatataaaaaaactagctttcgaggatgcgtcctgttccctgctactct 12609

                                                                         
Query: 293   ccacttcatcctgagtaatagacattcatcaatcacagcactaattcgctgaacagtcaa 352
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12608 ccacttcatcctgagtaatagacattcatcaatcacagcactaattcgctgaacagtcaa 12549

                                                                         
Query: 353   ttattaaaaaatgactgaagaatgtttaaaagaagttgcaactttttccaacctctcaga 412
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12548 ttattaaaaaatgactgaagaatgtttaaaagaagttgcaactttttccaacctctcaga 12489

                                                                         
Query: 413   tcccacaagaacgaacagtatcgatactacagctgatgttactcttcccaaaaatgagtt 472
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12488 tcccacaagaacgaacagtatcgatactacagctgatgttactcttcccaaaaatgagtt 12429

                                                                         
Query: 473   aaaacagtcaattaaaccgtttcatgttttcatgatgtctactgcaacaggtattgggac 532
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12428 aaaacagtcaattaaaccgtttcatgttttcatgatgtctactgcaacaggtattgggac 12369

                                                                         
Query: 533   cggtttattagtggggaacggtagatcaattgctattgcggnggttggtggtactttagt 592
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12368 cggtttattagtggggaacggtagatcaattgctattgcgggggttggtggtactttagt 12309

                                                                         
Query: 593   tggttacttaattattggtattatgttgacatgttgcatgcaaactgttggtgagcttgt 652
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12308 tggttacttaattattggtattatgttgacatgttgcatgcaaactgttggtgagcttgt 12249

                                                                         
Query: 653   tgttgctttttcaagtatgcctggtgggtttacatcttatggaaagcgtttcatagaacc 712
             |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12248 tgttgcttttccaagtatgcctggtgggtttacatcttatggaaagcgtttcatag-acc 12190

                                                                         
Query: 713   cgtctgtgggcttttaccatttcttgggtattttttccttaattggacctggcg-tttgc 771
             ||||||||||| ||||||||||||||| |||||||| || ||||||| ||| || |||||
Sbjct: 12189 cgtctgtgggc-tttaccatttcttggttatttttt-ctaaattgga-ctgtcgttttgc 12133

                                                                         
Query: 772   catttagaaatatgtgtcccttctatgacattcaacttttgggaccgaaatttcaatccc 831
             || ||||||||||||||| ||||||||||  ||||||||||| ||  |||| ||||| ||
Sbjct: 12132 ca-ttagaaatatgtgtcgcttctatgactatcaacttttggaacgaaaatatcaat-cc 12075

                     
Query: 832   ttctatcg 839
             ||||||||
Sbjct: 12074 ttctatcg 12067


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6888
Number of Sequences: 1807
Number of extensions: 6888
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)