BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB05FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1231 1616 0.0
>3x_Contig1231
Length = 5983
Score = 1616 bits (815), Expect = 0.0
Identities = 839/846 (99%), Gaps = 1/846 (0%)
Strand = Plus / Minus
Query: 86 ccagttcactggtaagagtatttatactgtatcattgactgcacattgcattatcacctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2912 ccagttcactggtaagagtatttatactgtatcattgactgcacattgcattatcacctt 2853
Query: 146 ctgatccactgtgcgacttgagaaatccgatatatttatgtgaggaggcttcctataaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2852 ctgatccactgtgcgacttgagaaatccgatatatttatgtgaggaggcttcctataaac 2793
Query: 206 ttttgcaacccatattcggacaaagaaggacagttttgtcctaaattaaagattgaatat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2792 ttttgcaacccatattcggacaaagaaggacagttttgtcctaaattaaagattgaatat 2733
Query: 266 ttaatggtgaatgaggacagatgatagcaaatttaaaggaaagaagttcacggaggcatc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2732 ttaatggtgaatgaggacagatgatagcaaatttaaaggaaagaagttcacggaggcatc 2673
Query: 326 ggagggctcttaccagagcaaatttcgtgacccctttcaacctactgtcatttgtggttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2672 ggagggctcttaccagagcaaatttcgtgacccctttcaacctactgtcatttgtggttt 2613
Query: 386 aatctacggctctgaaacttactgtcctattttagtcggttttgacaccgctcaacattt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2612 aatctacggctctgaaacttactgtcctattttagtcggttttgacaccgctcaacattt 2553
Query: 446 tttttttttttttagctttgatgatgaattttctgacattcataaccgatgatcaaatct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2552 tttttttttttttagctttgatgatgaattttctgacattcataaccgatgatcaaatct 2493
Query: 506 ttggtttaaagaatcactaaacgagagacgatgaaccacttcagttataaatatacttaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2492 ttggtttaaagaatcactaaacgagagacgatgaaccacttcagttataaatatacttaa 2433
Query: 566 tccggatagttgtccatgctatttaagtataggtagattgtttgtgactgtaggtagtaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2432 tccggatagttgtccatgctatttaagtataggtagattgtttgtgactgtaggtagtaa 2373
Query: 626 ggacattgggaagactagtgtggagcagtggaaatcaaaacaatattaataaataaggac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2372 ggacattgggaagactagtgtggagcagtggaaatcaaaacaatattaataaataaggac 2313
Query: 686 cgaagacccattaaagtttgcgggcatactgtggtggttcaattatttgtcaattcattc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2312 cgaagacccattaaagtttgcgggcatactgtggtggttcaattatttgtcaattcattc 2253
Query: 746 atccatccactcttaaccttcaactaaaaacctacacaaattttatcggtcatagctgtc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 atccatccactcttaaccttcaactaaaaacctacacaaattttatcggtcatagctgtc 2193
Query: 806 taaagctggtgctgagattaaaatcatgacttctgatatactgttgacgcactcgcaact 865
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 taaggctggtgctgagattaaaatcatgacttctgatatactgttgacgcactcgcaact 2133
Query: 866 tataccaactccgcagnaggatgaaactac-catgggtcccggtatgttttcaccatagc 924
|||||||||||||||| ||||||||||||| |||||||| | ||||||||||||||||
Sbjct: 2132 tataccaactccgcaggaggatgaaactacgaatgggtccggtaatgttttcaccatagc 2073
Query: 925 tgttga 930
||||||
Sbjct: 2072 tgttga 2067
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,189
Number of Sequences: 1807
Number of extensions: 16189
Number of successful extensions: 2501
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)