BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC38ZB05RM1.SCF screened BAC_end
         (938 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1639                                                        1558   0.0  

>3x_Contig1639 
          Length = 14140

 Score = 1558 bits (786), Expect = 0.0
 Identities = 874/896 (97%), Gaps = 7/896 (0%)
 Strand = Plus / Plus

                                                                        
Query: 44   gcttccttgaaacttctcggtattaatttaataatgtaagcgtttctgttaattt-acca 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4764 gcttccttgaaacttctcggtattaatttaataatgtaagcgtttctgttaatttcacca 4823

                                                                        
Query: 103  cttttcttcactttagtaagcgctattgtcagtttttactaagatgaataatgcctaaaa 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4824 cttttcttcactttagtaagcgctattgtcagtttttactaagatgaataatgcctaaaa 4883

                                                                        
Query: 163  aaaaaaaaatcaaaaaaaaaaaaaccgctcgaaacgacagacaacacgaacactgtgtct 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 aaaaaaaaatcaaaaaaaaaaaaaccgctcgaaacgacagacaacacgaacactgtgtct 4943

                                                                        
Query: 223  taatgtttctgaggaaagtcaggtcggtggttagaagtaccccaaggtgcaagacaatct 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 taatgtttctgaggaaagtcaggtcggtggttagaagtaccccaaggtgcaagacaatct 5003

                                                                        
Query: 283  gggattacggggttggataagccattgtaatagactgatctatagttactcctagtgtaa 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 gggattacggggttggataagccattgtaatagactgatctatagttactcctagtgtaa 5063

                                                                        
Query: 343  ataattgatgtgacactgacatatatatatgaggatggaaacaattatcaagtctgtctt 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 ataattgatgtgacactgacatatatatatgaggatggaaacaattatcaagtctgtctt 5123

                                                                        
Query: 403  gtttcacgctaactttattcaagtgtagtgtatggtcttttaatatattgattctacgga 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 gtttcacgctaactttattcaagtgtagtgtatggtcttttaatatattgattctacgga 5183

                                                                        
Query: 463  ggtcaatccaatcaacctaaaactgtatctaatgtctgctgctgccactaaacaattctt 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 ggtcaatccaatcaacctaaaactgtatctaatgtctgctgctgccactaaacaattctt 5243

                                                                        
Query: 523  gaaagctattgctgctcgtcgtactatctatgcgttgaagcctgaattgccatctggtgt 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 gaaagctattgctgctcgtcgtactatctatgcgttgaagcctgaattgccatctggtgt 5303

                                                                        
Query: 583  atctatcaatgatgttcaggaagtggtccaggccattgtcaaggacaccccaacttcttt 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 atctatcaatgatgttcaggaagtggtccaggccattgtcaaggacaccccaacttcttt 5363

                                                                        
Query: 643  caactgccaaggtaacagagcaattattctgactggtgaaacccacaagagtgtatggga 702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 caactgccaaggtaacagagcaattattctgactggtgaaacccacaagagtgtatggga 5423

                                                                        
Query: 703  ttctgttgtgaatgccattgaaggtgataacggtaagataagacctgcttctgccagaga 762
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5424 ttctgttgtgaatgccattgaaggtgataacggtaagaaaagacctgcttctgccagaga 5483

                                                                        
Query: 763  tgaagccttcggttctattatcttttttgacgatgacacgactattctgaaaagttgcga 822
            |||||||||||||||||||||||||||   |||||||| |||||  |||||||||||| |
Sbjct: 5484 tgaagccttcggttctattatctttttgaccgatgacaagacta--ctgaaaagttgcaa 5541

                                                                        
Query: 823  gctgacttcccagcatgttctgctttctttccaatcttttgccgaaactttccattgggg 882
            ||||||||||||||||| |||||| || |||| |||||| |||| ||| ||||| | || 
Sbjct: 5542 gctgacttcccagcatggtctgctatc-ttcccatctttcgccg-aacattccagt-ggt 5598

                                                                    
Query: 883  gctgctcaaatttccacatggactgccatcnaattgttgggtcttgggtggtcact 938
            ||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 5599 gctgctcaaatctccacatggactgccatcgaattgttgggtc-tgggtggtcact 5653


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,381
Number of Sequences: 1807
Number of extensions: 20381
Number of successful extensions: 1924
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)