BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB06RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1681 1608 0.0
>3x_Contig1681
Length = 11798
Score = 1608 bits (811), Expect = 0.0
Identities = 853/866 (98%), Gaps = 2/866 (0%)
Strand = Plus / Plus
Query: 50 cggttattggcggtgaaacggttcgaagtgctttgttccagaagctaccgctaagttacg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5452 cggttattggcggtgaaacggttcgaagtgctttgttccagaagctaccgctaagttacg 5511
Query: 110 tatgtaacttatccatgagttgtagaacaagaacattatcttcggtggatgtttgtctga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5512 tatgtaacttatccatgagttgtagaacaagaacattatcttcggtggatgtttgtctga 5571
Query: 170 acaagtaatcaagtctctgctttttgttaatggtgagaaattcatgatattctgggtcgt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5572 acaagtaatcaagtctctgctttttgttaatggtgagaaattcatgatattctgggtcgt 5631
Query: 230 ctacattgtagtgaacaattgatagtgagtccacttcggcaaataaaacatattttttcc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5632 ctacattgtagtgaacaattgatagtgagtccacttcggcaaataaaacatattttttcc 5691
Query: 290 catcgtgcgcaagaagctcaaaacagtctctttcacttcttatatcataattcgttacga 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5692 catcgtgcgcaagaagctcaaaacagtctctttcacttcttatatcataattcgttacga 5751
Query: 350 ggctcgggtgatcattttcgttacgtttgacgaatttgcctattatttcatttcttctaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5752 ggctcgggtgatcattttcgttacgtttgacgaatttgcctattatttcatttcttctaa 5811
Query: 410 gcggcaccgaatagggttcaaaaagatactgctgcaaagatgtagataggaaatcctctt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5812 gcggcaccgaatagggttcaaaaagatactgctgcaaagatgtagataggaaatcctctt 5871
Query: 470 tcgttctatctgtttttattgaatggaaattaatcgctaggtccatagggtaccaacgaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5872 tcgttctatctgtttttattgaatggaaattaatcgctaggtccatagggtaccaacgaa 5931
Query: 530 acatcgatcgccgaaattttctctctatgacatcgaagtcatggcgtctaatatctcttg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5932 acatcgatcgccgaaattttctctctatgacatcgaagtcatggcgtctaatatctcttg 5991
Query: 590 tttcatacaattgacaaaccttcctaaatgtcccaaaaaatgatatttcatctggatcaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5992 tttcatacaattgacaaaccttcctaaatgtcccaaaaaatgatatttcatctggatcaa 6051
Query: 650 ttccgaatttggatattgggtatgtggctgatgatagncttgggtcctggcatatctcat 709
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 6052 ttccgaatttggatattgggtatgtggctgatgatagctttgggtcctggcatatctcat 6111
Query: 710 tgtatctttacactgcngattcttccgactgagaaatgtacattanaaactctgtataaa 769
|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6112 tgtatcttacaactgcggattcttccgactgagaaatgtacattaaaaactctgtataaa 6171
Query: 770 tatctcctgcagataatttcattggtgctgtttc-aaatctacaatggcacccccatctt 828
|||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 6172 tatctcttgcagataatttcattgttgctgtttcaaaatctacaatggcacccccatctt 6231
Query: 829 gaacaccgntcatatcattaatcaaatccttgaaagtagcttcagtcaaaaactgatatt 888
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6232 gaacaccgttcatatcattaatcaaatccttgaaagtagcttcagtcaaaaactgatatt 6291
Query: 889 caaattgatgataccgtttnctttct 914
||||||||||||| ||||| ||||||
Sbjct: 6292 caaattgatgata-cgttttctttct 6316
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7048
Number of Sequences: 1807
Number of extensions: 7048
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)