BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB07FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1176 1425 0.0
>3x_Contig1176
Length = 5769
Score = 1425 bits (719), Expect = 0.0
Identities = 785/797 (98%), Gaps = 8/797 (1%)
Strand = Plus / Plus
Query: 85 cggccatgatccagaatcattcccagatggtatctacccgaaagaagttgaatatatgat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 cggccatgatccagaatcattcccagatggtatctacccgaaagaagttgaatatatgat 2622
Query: 145 cactgtgacaaagcgtttatcgatcgaggagtctttaaagattttagaaaagactttgaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2623 cactgtgacaaagcgtttatcgatcgaggagtctttaaagattttagaaaagactttgaa 2682
Query: 205 agaacatgaggatgacgcaaatttaccagaagatttgattgaaagaactcgttctctgct 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2683 agaacatgaggatgacgcaaatttaccagaagatttgattgaaagaactcgttctctgct 2742
Query: 265 cgatagggatgactacttgaaacagggtcatagtgagttcgaatggttcgaacagtgtaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 cgatagggatgactacttgaaacagggtcatagtgagttcgaatggttcgaacagtgtaa 2802
Query: 325 aattgatgcagcaatgatccactaccattctccttatccagaagtcagaacagtcacttc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 aattgatgcagcaatgatccactaccattctccttatccagaagtcagaacagtcacttc 2862
Query: 385 tccgatagatgatgaaactattcccatcgaaacttttagagcttacttcttgggcttctt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 tccgatagatgatgaaactattcccatcgaaacttttagagcttacttcttgggcttctt 2922
Query: 445 ttggaccatcttgggtgctggtgtcaatgaatttttcgtgcatagaaagccaaaaatctc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2923 ttggaccatcttgggtgctggtgtcaatgaatttttcgtgcatagaaagccaaaaatctc 2982
Query: 505 tttaacggccccagtgatgcagatcttgttatatccatgtggtaaattatttgaaagagt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2983 tttaacggccccagtgatgcagatcttgttatatccatgtggtaaattatttgaaagagt 3042
Query: 565 gatgcccaatcatactttcaagttaggtaagatttccgtcaatttcaatccaggaccgtg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3043 gatgcccaatcatactttcaagttaggtaagatttccgtcaatttcaatccaggaccgtg 3102
Query: 625 gtcgttcaaggaacagatgttttccactattattttcaatgtcgctacaagttacactta 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3103 gtcgttcaaggaacagatgttttccactattattttcaatgtcgctacaagttacactta 3162
Query: 685 cgtttcccataacatttatgtgcaaagattagaaatcttctacaacaataaatggctaga 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3163 cgtttcccataacatttatgtgcaaagattagaaatcttctacaacaataaatggctaga 3222
Query: 745 tttcngttatgaagtattgntaatggctatg-tcacaactgctcggttt-ggctacgcag 802
|||| |||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||
Sbjct: 3223 tttcggttatgaagtattgttaat-gctatgttcacaactgctcggtttcggctacgcag 3281
Query: 803 gt-tactcag-aaatttgtcatctac-atgaaaagtgcatttgg-caacgttgttccc-a 857
|| ||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||| |
Sbjct: 3282 gtatactcagaaaatttgtcatctacaatgaaaagtgcatatggccaacgttgttcccaa 3341
Query: 858 ctttggctcttattggg 874
|||||||||||| ||||
Sbjct: 3342 ctttggctcttaatggg 3358
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6271
Number of Sequences: 1807
Number of extensions: 6271
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)