BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB07RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1623 1382 0.0
>3x_Contig1623
Length = 14379
Score = 1382 bits (697), Expect = 0.0
Identities = 807/835 (96%), Gaps = 7/835 (0%)
Strand = Plus / Plus
Query: 53 caggatctttattgattgatcgtggtcggcccttggaaccaatccagccaggaattgctg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4681 caggatctttattgattgatcgtggtcggcccttggaaccaatccagccaggaattgctg 4740
Query: 113 atatagtagacgaaggtcaaggtttatatgttcattggaacgatggtgatcaatttactt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4741 atatagtagacgaaggtcaaggtttatatgttcattggaacgatggtgatcaatttactt 4800
Query: 173 acacgagtgagtatttgcagtcattggttggagaaagtgtgtccattaagaagtatgatc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4801 acacgagtgagtatttgcagtcattggttggagaaagtgtgtccattaagaagtatgatc 4860
Query: 233 ctaaagtttggaaccaagaaattgtgagcaaaccggattttttatccgcactaagcatcg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4861 ctaaagtttggaaccaagaaattgtgagcaaaccggattttttatccgcactaagcatcg 4920
Query: 293 attaccattcatacatggatccacacgatgaatccagtctttttgaaacgatcaagaagc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4921 attaccattcatacatggatccacacgatgaatccagtctttttgaaacgatcaagaagc 4980
Query: 353 tcgaccaatatggtatagggctagtgaccgatatcccagacgaggcagctaccaattaca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4981 tcgaccaatatggtatagggctagtgaccgatatcccagacgaggcagctaccaattaca 5040
Query: 413 gcgaatggtttgttcagatgatctgcgaacgaatcggacacgtaagaaccactttttatg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 gcgaatggtttgttcagatgatctgcgaacgaatcggacacgtaagaaccactttttatg 5100
Query: 473 gggagcttttcgatgtgaaaaaccaagcttcacaggctaacaacatcgcttatactgcga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5101 gggagcttttcgatgtgaaaaaccaagcttcacaggctaacaacatcgcttatactgcga 5160
Query: 533 aacctctgcctttacatatggatttgctatatttggagaatattccaggttggcaattgt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5161 aacctctgcctttacatatggatttgctatatttggagaatattccaggttggcaattgt 5220
Query: 593 tgcattgtatcaagaatagcgaaggtttggaagagaacggacagaactacttcgttgact 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5221 tgcattgtatcaagaatagcgaaggtttggaagagaacggacagaactacttcgttgact 5280
Query: 653 cattgggagcgttgaactacattaaaaantaagatcccagtgtattaaaggcattggaaa 712
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 5281 cattgggagcgttgaactacattaaaaataaggatcccagtgtattaaaggcattggaaa 5340
Query: 713 cgatttctatcacttatcatt-ttgaagagatgattaaaggt-ctaccagcaaagacttt 770
||||| ||||||||||||||| | ||||||||||| |||||| |||||||||||||| ||
Sbjct: 5341 cgattcctatcacttatcattatagaagagatgataaaaggtactaccagcaaagacctt 5400
Query: 771 tagtagagcacaagaagt-ttaaacagggttccatt-tttaccaccttttcaa-gaccat 827
|||||||||||||||||| | |||||| | || ||| || |||||| || ||| ||||||
Sbjct: 5401 tagtagagcacaagaagtatgaaacagtggtcaattattcaccaccattccaaggaccat 5460
Query: 828 tcaatct-naagatttccttgatattccctttttg-accagttcaagaaaggttt 880
||||||| ||||| || ||||||||| | ||| |||||||||||||||||||
Sbjct: 5461 tcaatctcaaagatatcactgatattccaatcttgaaccagttcaagaaaggttt 5515
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5810
Number of Sequences: 1807
Number of extensions: 5810
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)