BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB08FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1047 1376 0.0
>3x_Contig1047
Length = 4185
Score = 1376 bits (694), Expect = 0.0
Identities = 764/782 (97%), Gaps = 4/782 (0%)
Strand = Plus / Plus
Query: 87 tcgctagagctccagaaagtttgttgactggttgtaacaaattcttaaagaacttgaacg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2932 tcgctagagctccagaaagtttgttgactggttgtaacaaattcttaaagaacttgaacg 2991
Query: 147 ttaccttcagaagagatccaacctctttcagaccaagaatcaataaattagactcccaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2992 ttaccttcagaagagatccaacctctttcagaccaagaatcaataaattagactcccaaa 3051
Query: 207 tggataaagaacatttttcatctggtaactatttcttcttagaccacaatggtgtttaat 266
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3052 tggataaagaacaaaagtcatctggtaactatttcttcttagaccacaatggtgtttaat 3111
Query: 267 cgccttactaatggcgatcgggtatccattctaatgtgtcttttttgcttatttttttgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3112 cgccttactaatggcgatcgggtatccattctaatgtgtcttttttgcttatttttttgt 3171
Query: 327 cattattcatcattcatcctatctaattctcatcatttcttatctgttggctggttttta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3172 cattattcatcattcatcctatctaattctcatcatttcttatctgttggctggttttta 3231
Query: 387 aggttatattacaaatcatgaatcaattccaattgattggaacggcatagtcctcggcaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3232 aggttatattacaaatcatgaatcaattccaattgattggaacggcatagtcctcggcaa 3291
Query: 447 taccatttttgtgcataaatgttactgtacaataattaatacatctgtataatatctata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3292 taccatttttgtgcataaatgttactgtacaataattaatacatctgtataatatctata 3351
Query: 507 aattatttattctcccaattatcaaccaaaaatttcgcgagatattgaatgcaaatcaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3352 aattatttattctcccaattatcaaccaaaaatttcgcgagatattgaatgcaaatcaaa 3411
Query: 567 taaaacaggcctcttcaaaacgacacatacgaatcgtccgtgtccatctcgcataaataa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3412 taaaacaggcctcttcaaaacgacacatacgaatcgtccgtgtccatctcgcataaataa 3471
Query: 627 ataaataaatttatttatacattaagagagttcctactatattggtttcgaggtaggttt 686
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3472 ataaataaatttatttatacattaagagagttcctactatattggtttcgagtaaggttt 3531
Query: 687 attttgaaaaacattgacttatctgcctgattagtctagaacctgc-aaaccaatagtaa 745
|||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 3532 attttgaaaacaattgacttatctgcctgattagtctagaacttgcaaaaccaatagtaa 3591
Query: 746 taaatgttacaacgagttgacttactatcaaacatattgatgcaaatgggaatcgaagac 805
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct: 3592 taaatgttacaacgagttgacttactatcaaacataatgatgcaaataggaatcgaggac 3651
Query: 806 agtatattttccacacaattaggtgtcttctgaaatggcgt-acccaaac-aaactgctc 863
|| ||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||||
Sbjct: 3652 agaatattttccacaccattaggtgtcttctgaaat-gcgtcacccaaacaaaactgctc 3710
Query: 864 aa 865
||
Sbjct: 3711 aa 3712
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7925
Number of Sequences: 1807
Number of extensions: 7925
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)