BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB08RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1444 1407 0.0
>3x_Contig1444
Length = 7580
Score = 1407 bits (710), Expect = 0.0
Identities = 824/856 (96%), Gaps = 5/856 (0%)
Strand = Plus / Minus
Query: 45 gcttaacatcgtctatgatctcatttgcgttcactttgtgtaccgactttctgatggggc 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3847 gcttaacatcgtctatgatctcatctgcgttcactttgtgtaccgactttctgatggggc 3788
Query: 105 caaactcgctttcaaggtcatccattcgtactaataaattgaattgtggattaatactaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787 caaactcgctttcaaggtcatccattcgtactaataaattgaattgtggattaatactaa 3728
Query: 165 ctgtaatcgaatgagattagtttgacagtgttagaacatggactttggtttattatttat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 3727 ctgtaatcgaatgagattagtttgacagtgttagaacatggactttggtttatgaattat 3668
Query: 225 ctaaggtaccgttctactactttggatgtattcattgttgttgatttagttttaaggtta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3667 ctaaggtaccgttctactactttggatgtattcattgttgttgatttagttttaaggtta 3608
Query: 285 ttaaatgtttagtaaggttacccgaaaataatgaattattactagtcaggtatagtgaat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3607 ttaaatgtttagtaaggttacccgaaaataatgaattattactagtcaggtatagtgaat 3548
Query: 345 tggatgcaccatagataagaacaacggaacttcttccaatacttgattcaaaacattatc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3547 tggatgcaccatagataagaacaacggaacttcttccaatacttgattcaaaacattatc 3488
Query: 405 ttccgaactggtagcaacaggacataaaagacgtgactcatacgaattaatcccatttaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3487 ttccgaactggtagcaacaggacataaaagacgtgactcatacgaattaatcccatttaa 3428
Query: 465 acaatgtctaagtaataatcatgtcagaacacacactctttgttcgcaatgactttatct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3427 acaatgtctaagtaataatcatgtcagaacacacactctttgttcgcaatgactttatct 3368
Query: 525 tgtctttctttacatctgtggcacgaaattgataacaatatgacaaaaaagaataaacaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3367 tgtctttctttacatctgtggcacgaaattgataacaatatgacaaaaaagaataaacaa 3308
Query: 585 agataggaccgacagaaaagggaaaatctttgttattggtaactctgacaccttctcatc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307 agataggaccgacagaaaagggaaaatctttgttattggtaactctgacaccttctcatc 3248
Query: 645 caaacttacattntgtctcgtttgtcaactacccccttgtgtttaatcaggtatggaagg 704
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3247 caaacttacattttgtctcgtttgtcaactacccccttgtgtttaatcaggtatggaagg 3188
Query: 705 agtgacgttgaccacacatgaattatgcagacgctgtgactnttagtataaga-ttgtga 763
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 3187 agtgacgttgaccacacatgaattatgcagacgctgtgacttttagtataagagttgtga 3128
Query: 764 gatattacttc-tattcgagtatttttgttcgaat-ttttttttttttttttttgaacta 821
||||||||||| ||||||||||| | ||| ||||| | | | | | | | | ||||||||
Sbjct: 3127 gatattacttcttattcgagtatatatgtacgaatatgtatatatatatatattgaacta 3068
Query: 822 ggccacct-gaacatttaaataaa-taaaaattaataccacctttattattaccctaacc 879
|| || || ||||||||||||||| ||| ||||||||| || |||||||||| || | |
Sbjct: 3067 ggtcaactagaacatttaaataaattaataattaatactactattattattactcttatc 3008
Query: 880 attctaaatcttatta 895
||||| | ||||||||
Sbjct: 3007 attcttattcttatta 2992
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,298
Number of Sequences: 1807
Number of extensions: 27298
Number of successful extensions: 3809
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)