BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB09FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1294 1578 0.0
3x_Contig58 301 1e-81
>3x_Contig1294
Length = 6938
Score = 1578 bits (796), Expect = 0.0
Identities = 821/828 (99%), Gaps = 1/828 (0%)
Strand = Plus / Minus
Query: 97 tgacctctttatcttcctcgatagtttcgaaagcatcaccgtgcaaatccttcaatttat 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4326 tgacctctttatcttcctcgatagtttcgaaagcatcaccgtgcaaatccttcaatttat 4267
Query: 157 caatctttagagactctggcaacttgacagcaaatcccttaattaaggaatagtcatgga 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4266 caatctttagagactctggcaacttgacagcaaatcccttaattaaggaatagtcatgga 4207
Query: 217 caatagtaccacccatagaagaaatggagtttttgatctttgaagcgtcggcttctggaa 276
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4206 caatagtaccacccagagaagaaatggagtttttgatctttgaagcgtcggcttctggaa 4147
Query: 277 cgctgtctttgaatgtgataatgaacgatttgaatgtcatgattgttatgattggggttg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4146 cgctgtctttgaatgtgataatgaacgatttgaatgtcatgattgttatgattggggttg 4087
Query: 337 tttgcttctggctcagaatgaccccttctttaccgagactatcaaatgtggtttatagaa 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4086 tttgcttctggctcagaatgaccccttctttaccgagactatcaaatgtggtttatagaa 4027
Query: 397 gagaaagttactgagtcaaacagatttcatttatagaagagaaagttactgagtcaaaca 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4026 gagaaagttactgagtcaaacagatttcatttatagaagagaaagttactgagtcaaaca 3967
Query: 457 gatttcatttatatagcaacaaagtatagactataaagaacaaaagaagtcagggactgt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3966 gatttcatttatatagcaacaaagtatagactataaagaacaaaagaagtcagggactgt 3907
Query: 517 gtaagtgcaatcgcgtcagtaaggtatattttggacgttataggtataaataaatgaaac 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3906 gtaagtgcaatcgcgtcagtaaggtatattttggacgttataggtataaataaatgaaac 3847
Query: 577 aaacaaaagtatatacataaataagagtaaaattggttgattgtgatctctgaattgttt 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3846 aaacaaaagtatatacataaataagagtaaaattggttgattgtgatctctgaattgttt 3787
Query: 637 ctgcgaaattgggtccttaacggtgaactgcggacatgccatagttgtaaggcagtttgt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3786 ctgcgaaattgggtccttaacggtgaactgcggacatgccatagttgtaaggcagtttgt 3727
Query: 697 gagcagcaagatcatatttacatcgttcagtaatgtaggtcaatttcgtcgccttctagt 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3726 gagcagcaagatcatatttacatcgttcagtaatgtaggtcaatttcgtcgccttctagt 3667
Query: 757 cggtcactgagctctttgtttatgatatccagtaacttcgtaccgtctctcaacgaaacc 816
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3666 cggtcactgagctctttgtttaggatatccagtaacttcgtaccgtctctcaacgaaacc 3607
Query: 817 cactccttttgatagtaatcgaatcggttgggcccagacaccggagtagccaaccatatt 876
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3606 cactccttttgatagtaatcgaatcggttgggcccagacaccggagaagccaaccatatt 3547
Query: 877 tgtttatttggaggctgctttgtgattac-tatgtaccaacggaagga 923
||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 3546 tgtttatttgggggctgcttgttgattacatatgtaccaacggaagga 3499
>3x_Contig58
Length = 808
Score = 301 bits (152), Expect = 1e-81
Identities = 174/180 (96%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 745 tcgccttctagtcggtcactgagctctttgtttatgatatccagtaacttcgtaccgtct 804
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 tcgccttctagtcggtcactgagctctttgtttaggatatccagtaacttcgtaccgtct 60
Query: 805 ctcaacgaaacccactccttttgatagtaatcgaatcggttgggcccagacaccggagta 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 61 ctcaacgaaacccactccttttgatagtaatcgaatcggttgggcccagacaccggagaa 120
Query: 865 gccaaccatatttgtttatttggaggctgctttgtgattac-tatgtaccaacggaagga 923
||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 121 gccaaccatatttgtttatttgggggctgcttgttgattacatatgtaccaacggaagga 180
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6891
Number of Sequences: 1807
Number of extensions: 6891
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)