BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB09RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1641 0.0
>3x_Contig1749
Length = 22923
Score = 1641 bits (828), Expect = 0.0
Identities = 859/868 (98%), Gaps = 1/868 (0%)
Strand = Plus / Minus
Query: 46 atttgatgatcttgatgataatgaagagatgatgagatgtctgtacatctcaagactgtc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21221 atttgatgatcttgatgataatgaagagatgatgagatgtctgtacatctcaagactgtc 21162
Query: 106 caagtaccaacaccagacggaaattgaacatgctcgtaaagttctctctgataagtatta 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21161 caagtaccaacaccagacggaaattgaacatgctcgtaaagttctctctgataagtatta 21102
Query: 166 tttgaaagataatcggactgtcttgttggctgagatagaacttttgaataaccaatccaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21101 tttgaaagataatcggactgtcttgttggctgagatagaacttttgaataaccaatccaa 21042
Query: 226 gtttactcagtgtatgaaattatgtgaacaagttctcgaagtcgatgagtataaccttga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21041 gtttactcagtgtatgaaattatgtgaacaagttctcgaagtcgatgagtataaccttga 20982
Query: 286 agttctaccaatctatatacaatgtttgcattcgttcgcagccaagaacaaattgtttct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20981 agttctaccaatctatatacaatgtttgcattcgttcgcagccaagaacaaattgtttct 20922
Query: 346 cctttcacacaaattggcagaaaacttccccaaatcaccagtgacatggttcgcagttgc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20921 cctttcacacaaattggcagaaaacttccccaaatcaccagtgacatggttcgcagttgc 20862
Query: 406 tacctactacctttgtatggggaaagtttcagaagcaaggaaatatttttctcgttcttc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20861 tacctactacctttgtatggggaaagtttcagaagcaaggaaatatttttctcgttcttc 20802
Query: 466 aataatggatccaagttttgggtactcttggcttggttttgctcatacttacgtcgctga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20801 aataatggatccaagttttgggtactcttggcttggttttgctcatacttacgtcgctga 20742
Query: 526 gggagaacatgaacaagcattatcagcatattccactgctgctagatttttccctggaac 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20741 gggagaacatgaacaagcattatcagcatattccactgctgctagatttttccctggaac 20682
Query: 586 acatctaccacatctttatctcggaatgcaatacaatagaatggatgacctatctcttgc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20681 acatctaccacatctttatctcggaatgcaatacaatagaatggatgacctatctcttgc 20622
Query: 646 cgaagaatatttcatgatggcatatgacatgtgccccactgatcccctattacttaatga 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20621 cgaagaatatttcatgatggcatatgacatgtgccccactgatcccctattacttaatga 20562
Query: 706 gttgggtgtcatatatttcaagatgcaaaactacatcaaagctaagaagtacatgatacg 765
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 20561 gttgggtgtcatatatttcaagaggcaaaactacatcaaagctaagaagtacatgaaacg 20502
Query: 766 tgcacacgatgcaataaagaatatgaaatcagaaaagtaagcttggatatcgattgtgat 825
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 20501 tgcacacgatgcaataaagaatatgaaatcagaaagtaaagcttggatatcgattgtgat 20442
Query: 826 aaattttggtcacacttacaggatacttggtgaggacgaaagagccatcaaatgccttaa 885
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 20441 aaatttgggtcacacttacaggaaacttggtgaggacgaaagagccatcaaatgctttaa 20382
Query: 886 gaccgtattagagaagtagtaaacctac 913
||||||||||||| ||||||||||||||
Sbjct: 20381 gaccgtattagag-agtagtaaacctac 20355
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6966
Number of Sequences: 1807
Number of extensions: 6966
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)