BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC38ZB10FM1.SCF screened BAC_end
         (968 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1209                                                        1176   0.0  

>3x_Contig1209 
          Length = 5033

 Score = 1176 bits (593), Expect = 0.0
 Identities = 623/629 (99%), Gaps = 3/629 (0%)
 Strand = Plus / Plus

                                                                        
Query: 89   cagcaatttcttcagtttggaaagtaacgtaagcaacaccacgggcatctaccagtttct 148
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4381 cagcaatttcttcagtttggaaagtaacgtaagcaacaccacggg-atctaccagtttct 4439

                                                                        
Query: 149  gggttcttgacgacgaatactctaggaatctcaccgaatgggaagagtaattctctttta 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4440 gggttcttgacgacgaatactctaggaatctcaccgaatgggaagagtaattctctttta 4499

                                                                        
Query: 209  agcacttcttcatctgcaagttcgttaacctgggtcaatctaatagtctttgcatcatca 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4500 agcacttcttcatctgcaagttcgttaacctgggtcaatctaatagtctttgcatcatca 4559

                                                                        
Query: 269  cgttctctttggtcttggtaagcattagaagatggatcacgagcaccagcacgtagggat 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4560 cgttctctttggtcttggtaagcattagaagatggatcacgagcaccagcacgtagggat 4619

                                                                        
Query: 329  ggtggcacgtatctgccagagccagagcctccttgagcgctcatatctccaccaccgata 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4620 ggtggcacgtatctgccagagccagagcctccttgagcgctcatatctccaccaccgata 4679

                                                                        
Query: 389  gccgggtctaaaccagcagatgtagtaggtttctttcccaaagtgtctttgtacggacaa 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4680 gccgggtctaaaccagcagatgtagtaggtttctttcccaaagtgtctttgtacggacaa 4739

                                                                        
Query: 449  tgcatggtgaaatgcgcaccaccacaaattctacaagtaattaccttttgagtcgagtta 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4740 tgcatggtgaaatgcgcaccaccacaaattctacaagtaattaccttttgagtcgagtta 4799

                                                                        
Query: 509  gcagccttctcctttgccttttcttcttccatttccttccagttaggagacaagtctaac 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4800 gcagccttctcctttgccttttcttcttccatttccttccagttaggagacaagtctaac 4859

                                                                        
Query: 569  tctaattcttcacctaattgagtggttgaaatatctggtcctggggcagctcccttatca 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4860 tctaattcttcacctaattgagtggttgaaatatctggtcctggggcagctcccttatca 4919

                                                                        
Query: 629  gcaccatattgcttccaatttcttctcaaggcgatgttctttgttaac-ttctcagtgac 687
            |||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 4920 gcaccatatttcttccaatttcttctcaaggcgatgttc-ttgttaactttctcggtgac 4978

                                         
Query: 688  agtaatttcctttaccttctgcgtaacct 716
            |||||||||||| ||||||||||||||||
Sbjct: 4979 agtaatttccttaaccttctgcgtaacct 5007


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7547
Number of Sequences: 1807
Number of extensions: 7547
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)