BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB10RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig903 1392 0.0
>3x_Contig903
Length = 4000
Score = 1392 bits (702), Expect = 0.0
Identities = 784/803 (97%), Gaps = 7/803 (0%)
Strand = Plus / Plus
Query: 52 gcttaaatacttgtactatgaattgttccgtgatacatttgagaaggtggacaaattgtt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2678 gcttaaatacttgtactatgaattgttccgtgatacatttgagaaggtggacaaattgtt 2737
Query: 112 aacgcaagaattgcacagcgcttccaccatgggcagctcccatagtcaaagatatgagaa 171
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2738 aacgcaagaattgcacagc-cttccaccatgggcagctcccatagtcaaagatatgagaa 2796
Query: 172 agtccaacttgaaaactaacaggaaaataatgactaacagactgtactttaacctatt-a 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2797 agtccaacttgaaaactaacaggaaaataatgactaacagactgtactttaacctattta 2856
Query: 231 ttggacgtttacagaccctggaatttctttacagacaacacgcttatgagatacgttgtg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2857 ttggacgtttacagaccctggaatttctttacagacaacacgcttatgagatacgttgtg 2916
Query: 291 ccaaacccaagaacggacaacatcatccttggtatactgaagaactgcctattgttcgtt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2917 ccaaacccaagaacggacaacatcatccttggtatactgaagaactgcctattgttcgtt 2976
Query: 351 ttactatttgtaccaaactgtgagagacaattcgaagagattatcgaggaacggttgatc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 ttactatttgtaccaaactgtgagagacaattcgaagagattatcgaggaacggttgatc 3036
Query: 411 gagcaatcccaggaagaggaacacgttcaacttgcctagtgccccaattctagaatctag 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3037 gagcaatcccaggaagaggaacacgttcaacttgcctagtgccccaattctagaatctag 3096
Query: 471 gagcttaaaaacgattctaaatctaaaattcaatccaaatctatacactatgtatctatg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3097 gagcttaaaaacgattctaaatctaaaattcaatccaaatctatacactatgtatctatg 3156
Query: 531 tattgtgtctggccccatatacaatgtaaaaaattagtaacaccagtgagaaaggcgaga 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3157 tattgtgtctggccccatatacaatgtaaaaaattagtaacaccagtgagaaaggcgaga 3216
Query: 591 ccataccgatacgttagtaaaaacaaactctcaacacccaaaacctctaaactaccacta 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3217 ccataccgatacgttagtaaaaacaaactctcaacacccaaaacctctaaactaccacta 3276
Query: 651 ctgagaagtttcttcacgaccttctctcaatattgcaacggtctttctttattcggacat 710
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3277 ctgaaaagtttcttcacgaccttctctcaatattgcaacggtctttctttattcggacat 3336
Query: 711 ctcagatcaagacagtagcaccttaaaaggcaaaaagagttnncagatcttcccaatttc 770
||||||||||||||||||||||||||| ||| |||||||| |||||||||| |||
Sbjct: 3337 ctcagatcaagacagtagcaccttaaagggc-gaaagagttccagaatcttcccaa-ttc 3394
Query: 771 tgacaaaatgaa-tataaatcaagtccgggttacantattaacccggtgtccttatctta 829
|||||||||||| |||||||||||||||||| ||| || ||| ||||||||||||||| |
Sbjct: 3395 tgacaaaatgaattataaatcaagtccgggtaacatta-taaaccggtgtccttatctca 3453
Query: 830 ttggaggcgctttgcacatgccc 852
|||||||||| ||||||||||||
Sbjct: 3454 ttggaggcgc-ttgcacatgccc 3475
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5952
Number of Sequences: 1807
Number of extensions: 5952
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)