BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC38ZB11FM1.SCF screened BAC_end (932 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1792 1479 0.0 >3x_Contig1792 Length = 28468 Score = 1479 bits (746), Expect = 0.0 Identities = 814/834 (97%), Gaps = 2/834 (0%) Strand = Plus / Minus Query: 86 tcccccctctacccactttaataaagtagtcccgaataccacagcaatctctttagcttg 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4037 tcccccctctacccactttaataaagtagtcccgaataccacagcaatctctttagcttg 3978 Query: 146 acttgctttgctccatctagggaaaactttctcctgcgtcatttcatgttcgaggggaat 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3977 acttgctttgctccatctagggaaaactttctcctgcgtcatttcatgttcgaggggaat 3918 Query: 206 ttcggaagatactttttcgagattaaaaatttttccgtcaaagtaaataaaacgtgagaa 265 ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3917 ttcggaagagactctcccgagattaaaaatttttccgtcaaagtaaataaaacgtgagaa 3858 Query: 266 aagcgggaaaagtgtttatccggattgatttcacggagaaactacaggatgcactttttt 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3857 aagcgggaaaagtgtttatccggattgatttcacggagaaactacaggatgcactttttt 3798 Query: 326 ccccaatccattttttctacccaaagctcgctaagatctaggggaatctaaccgtctagc 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3797 ccccaatccattttttctacccaaagctcgctaagatctaggggaatctaaccgtctagc 3738 Query: 386 aaatgatcgccatggctagtatatacacattcttactcatggtaaaagggttaagaatga 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3737 aaatgatcgccatggctagtatatacacattcttactcatggtaaaagggttaagaatga 3678 Query: 446 cacgcatgataccgactgaacgatgttcattatcggagattttacatgcctcgtcatttt 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3677 cacgcatgataccgactgaacgatgttcattatcggagattttacatgcctcgtcatttt 3618 Query: 506 ccttccatattgttaggaaaacagacaaatgaatgaaaatggaaaaagtgttgttaaagc 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3617 ccttccatattgttaggaaaacagacaaatgaatgaaaatggaaaaagtgttgttaaagc 3558 Query: 566 cataaccagagagggaaaaaaaaaataaccgccgtcctttttatattaaaatgaaatggc 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3557 cataaccagagagggaaaaaaaaaataaccgccgtcctttttatattaaaatgaaatggc 3498 Query: 626 ggctatcgatacagattaggtatttagtatctcgttcaatccacgactcgttattaattt 685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3497 ggctatcgatacagattaggtatttagtatctcgttcaatccacgactcgttattaattt 3438 Query: 686 ctgggaattcacttctttttct-aactataaaa-gatgaacaaaagaatcagattatggt 743 |||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| Sbjct: 3437 ctgggaattcacttctttttctaaactataaaaggatgaacaaaagaatcagataatggt 3378 Query: 744 ttcaacctatatcttgtttctaacgcaataacagaccgataatactcagctgaagattgc 803 ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 3377 ttcaacccaaatcttgtttctaacgcaataacagacggataatactcagctgaagattgc 3318 Query: 804 atatcgtatcaagtttgcttataacctgtccaggctcgagcatttaatctattgtcagtt 863 ||||||||||| |||||| ||| ||||| |||||||||||||||| |||| |||||||| Sbjct: 3317 atatcgtatcaggtttgcaaataccctgtacaggctcgagcatttagtctaatgtcagtt 3258 Query: 864 ttatagatgaagttcggcggcatttttgttttgggtgccttcattttggcttcg 917 |||||||||| ||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 3257 ttatagatgaggttcggcggcatttttgttttgggtgctttcagtttggcttcg 3204 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7794 Number of Sequences: 1807 Number of extensions: 7794 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 932 length of database: 10,358,551 effective HSP length: 16 effective length of query: 916 effective length of database: 10,329,639 effective search space: 9461949324 effective search space used: 9461949324 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)