BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB11RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig819 1429 0.0
>3x_Contig819
Length = 3350
Score = 1429 bits (721), Expect = 0.0
Identities = 754/763 (98%), Gaps = 2/763 (0%)
Strand = Plus / Minus
Query: 43 cttgctgcattatatttcaaatatattgacttgtctatggcaagttgtctcaactttgtg 102
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 762 cttgctgcattatatttcaaatatattgacttgtctatggcaagttgtttcaactttgtg 703
Query: 103 tctgtaattgagctaaaagcggtatccttgttagatccctctgcctctttggcatcgaaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tctgtaattgagctaaaagcggtatccttgttagatccctctgcctctttggcatcgaaa 643
Query: 163 t-aagcacttcttgaaactgagtagatatggtattcgccatggacgaccagaatgatttt 221
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tcaagcacttcttgaaactgagtagatatggtattcgccatggacgaccagaatgatttt 583
Query: 222 ttagaaacagtgttccagtacccttgcgtcaactcttcaactttctccaagttgtcatcc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttagaaacagtgttccagtacccttgcgtcaactcttcaactttctccaagttgtcatcc 523
Query: 282 aatttccccaacatctcttgagccttatttgtaacggtaccgcccaaattctcagggatt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aatttccccaacatctcttgagccttatttgtaacggtaccgcccaaattctcagggatt 463
Query: 342 tggaaattcaaagagtccttctctttaacaaaacctaaaatagcctttgaagttttctgg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tggaaattcaaagagtccttctctttaacaaaacctaaaatagcctttgaagttttctgg 403
Query: 402 agctgttcatccacttggtcctcgaacttctgaaacgcctcatcagtcttatcatcatgt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agctgttcatccacttggtcctcgaacttctgaaacgcctcatcagtcttatcatcatgt 343
Query: 462 tttgtcaccttaacggcatctgcagtctctgttgcagtctcttcatataagaaatccatc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tttgtcaccttaacggcatctgcagtctctgttgcagtctcttcatataagaaatccatc 283
Query: 522 gctaaagacgcttttcacgactaatgctaagctagctattaccaaagtaccttaatgtca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gctaaagacgcttttcacgactaatgctaagctagctattaccaaagtaccttaatgtca 223
Query: 582 ccaaataacacgtctggctagatacgctcgacgcttatcgacagacttctcgcgagaact 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ccaaataacacgtctggctagatacgctcgacgcttatcgacagacttctcgcgagaact 163
Query: 642 cttntgttgcgcctccccttcttgaagatcaatcctttanaggttcaaaactcaaaatgt 701
||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||
Sbjct: 162 cttttgttgcgcctccccttcttgaagatcaatcctttaaaggttc-aaactccaaatgt 104
Query: 702 ttcatgattttccttattattggaccttttcattgcaaagaagaacagtttcaacatgtc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ttcatgattttccttattattggaccttttcattgcaaagaagaacagtttcaacatgtc 44
Query: 762 taaaatacagtaggaagaaagcttctcatcttgtctctgctca 804
||||||||||||||||||| || |||||||||||||||||||
Sbjct: 43 taaaatacagtaggaagaagcctcctcatcttgtctctgctca 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6797
Number of Sequences: 1807
Number of extensions: 6797
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)