BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZB12FM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1608 1259 0.0
>3x_Contig1608
Length = 13037
Score = 1259 bits (635), Expect = 0.0
Identities = 654/659 (99%), Gaps = 1/659 (0%)
Strand = Plus / Minus
Query: 87 cctaacctactaaaggaaggaatatggtgctttggggaatattccgagttaattgataac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4990 cctaacctactaaaggaaggaatatggtgctttggggaatattccgagttaattgataac 4931
Query: 147 tgtgacactctcgttggcatactcctaaacaaagccaataaacttccagacaccgtgata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4930 tgtgacactctcgttggcatactcctaaacaaagccaataaacttccagacaccgtgata 4871
Query: 207 cagacaatgatttctgcattagtgaaattattctcaacctatgctaacacagagggtaga 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4870 cagacaatgattcctgcattagtgaaattattctcaacctatgctaacacagagggtaga 4811
Query: 267 accaaatctgaaatatcagatcttctttctacactaatcgcattcatggaacaaaaatac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4810 accaaatctgaaatatcagatcttctttctacactaatcgcattcatggaacaaaaatac 4751
Query: 327 agatcaacgaattttgatatacaagaacgaagcgtagagttctatgaaatgttaaaactc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4750 agatcaacgaattttgatatacaagaacgaagcgtagagttctatgaaatgttaaaactc 4691
Query: 387 tgtcaagatgctttgcaagatgaaacggaagggttacctctattaattaccgacgtttta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4690 tgtcaagatgctttgcaagatgaaacggaagggttacctctattaattaccgacgtttta 4631
Query: 447 cctagtcttttcaatgagtatgaacttggcccaatgtcacacggacaacaacagcagttg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4630 cctagtcttttcaatgagtatgaacttggcccaatgtcacacggacaacaacagcagttg 4571
Query: 507 gttaatgcgttaacactcgatttatacactccatttttatcttctgttgaactcgaagaa 566
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4570 gttaaggcgttaacactcgatttagacactccatttttatcttctgttgaactcgaagaa 4511
Query: 567 ttaatgaaaaatgaagaactatatgaagatgaagctgcatattattccgacaaggagagc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4510 ttaatgaaaaatgaagaactatatgaagatgaagctgcatattattccgacaaggagagc 4451
Query: 627 gttaaatctgctgcaagcgctggaagttctgacggatctgtaactcaagatatctcgtca 686
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4450 gttaaatctgctgcaagcgctggaagttctgacggatctgtaactcaggatatctcgtca 4391
Query: 687 gagaaagacatttcaatgacagaagaagaacttgctgctttag-agagcgcagaagaca 744
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4390 gagaaagacatttcaatgacagaagaagaacttgctgctttagaagagcgcagaagaca 4332
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7257
Number of Sequences: 1807
Number of extensions: 7257
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)