BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC01RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1352 0.0
>3x_Contig1648
Length = 16375
Score = 1352 bits (682), Expect = 0.0
Identities = 766/782 (97%), Gaps = 9/782 (1%)
Strand = Plus / Plus
Query: 49 tgactaagggcccagagaacacagaagaattaactaatgaagctaatgaattcaagattt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8600 tgactaagggcccagagaacacagaagaattaactaatgaagctaatgaattcaagattt 8659
Query: 109 tttggggtaaaaaagcatctcttcgtagattcaaggacggttccattgcaaactgctgtg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8660 tttggggtaaaaaagcatctcttcgtagattcaaggacggttccattgcaaactgctgtg 8719
Query: 169 tctggtcaacttctgctattgaaagtgttgtttcttcgattttgtcctatgttctaaggc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8720 tctggtcaacttctgctattgaaagtgttgtttcttcgattttgtcctatgttctaaggc 8779
Query: 229 tacatttgactgaagactgcaaactcatcaataattccactagccaattccaacagttgt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8780 tacatttgactgaagactgcaaactcatcaataattccactagccaattccaacagttgt 8839
Query: 289 taccactaccgaacctacctgcatcttcaaagacatcagttctaaacctatcaagctact 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8840 taccactaccgaacctacctgcatcttcaaagacatcagttctaaacctatcaagctact 8899
Query: 349 ataacttgaagaagtcctttgacgatttgtataaaatcatgttcgagctaaaactcccat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8900 ataacttgaagaagtcctttgacgatttgtataaaatcatgttcgagctaaaactcccat 8959
Query: 409 tatcaattaaatctcttttacctattggttctgcattcaggtacacatcattatgtcagc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8960 tatcaattaaatctcttttacctattggttctgcattcaggtacacatcattatgtcagc 9019
Query: 469 ctgtcccatacgcatattctaatcctgatttcttacaagacgttgttatcgaattcgaaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9020 ctgtcccatacgcatattctaatcctgatttcttacaagacgttgttatcgaattcgaaa 9079
Query: 529 cgtctacaaaatggcctgacgaaattacttcgttggaaaaggctaaagctgcatttttat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9080 cgtctacaaaatggcctgacgaaattacttcgttggaaaaggctaaagctgcatttttat 9139
Query: 589 tgaagattcaagaatccatcacgcagactcatagtgagtacaagtgctactttacacgtg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9140 tgaagattcaagaatccatcacgcagactcatagtgagtacaagtgctactttacacgtg 9199
Query: 649 atgaatcgattccatacaacttggaaaaagttactctaaacattttgaactccagaaaga 708
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct: 9200 atgaatcgattccatacaacttggaaatagttactctaaacattttg-actccagaagga 9258
Query: 709 tacggttttcaagtttaaagttcctaactgtagagagacgaaattattgtattttgagag 768
||||| ||||||||||| |||| ||||||| ||||||||||| ||| |||| ||||||||
Sbjct: 9259 tacgg-tttcaagtttagagtt-ctaactg-agagagacgaagtta-tgta-tttgagag 9313
Query: 769 caattaacaaccccaggaaaagaactaaaaccagagcttggaaaagacatttcttgaaat 828
|||||||||| | || |||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 9314 caattaacaa-cgcaagaaaagaactaagaccagagc-tggaaaagaca-ttcttgaaat 9370
Query: 829 tt 830
||
Sbjct: 9371 tt 9372
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7459
Number of Sequences: 1807
Number of extensions: 7459
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)