BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC02FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1481 0.0
>3x_Contig1642
Length = 16641
Score = 1481 bits (747), Expect = 0.0
Identities = 799/811 (98%), Gaps = 4/811 (0%)
Strand = Plus / Minus
Query: 87 caggtgcaagtcaccaatgaaatccatattatctttcaaaactgagtcggacgttactaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13390 caggtgcaagtcaccaatgaaatccatattatctttcaaaactgagtcggacgttactaa 13331
Query: 147 ttctgactttagcttgaaagttgatttcaaaaattctagttcgttaacaatcatggagtg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13330 ttctgactttagcttgaaagttgatttcaaaaattctagttcgttaacaatcatggagtg 13271
Query: 207 cacgtaagctatgacatcaccaagatatctgacagggtcatgggccgatagtataatagg 266
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13270 cacgtaagctaggacatcaccaagatatctgacagggtcatgggccgatagtataatagg 13211
Query: 267 tctttgtaactttttattatctatatcaaattgagacaaaaagtcgtctaataacctttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13210 tctttgtaactttttattatctatatcaaattgagacaaaaagtcgtctaataacctttt 13151
Query: 327 agaccttaaccccacaattctgttcaagaaatcttgaaagaattgaacgtcatttgataa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13150 agaccttaaccccacaattctgttcaagaaatcttgaaagaattgaacgtcatttgataa 13091
Query: 387 atgaatcaagctcgtttggaagttagagagagattcatcgccaatagtacgttcgccgta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13090 atgaatcaagctcgtttggaagttagagagagattcatcgccaatagtacgttcgccgta 13031
Query: 447 ctgccttgataaagtatcatattcttcaatgaagtttatgagataattatatatccgttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13030 ctgccttgataaagtatcatattcttcaatgaagtttatgagataattatatatccgttt 12971
Query: 507 gttcgataccgttaaattattattcatcgtttttaatagtgccacgccagcagatgtggt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12970 gttcgataccgttaaattattattcatcgtttttaatagtgccacgccagcagatgtggt 12911
Query: 567 cttctcattggagagtagatatgttgctttttctttgataaagttgattttattcagaat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12910 cttctcattggagagtagatatgttgctttttctttgataaagttgattttattcagaat 12851
Query: 627 ctgaaagaagaggtcattaattgttccattctgtaaatgatccagttctaattgcgttaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12850 ctgaaagaagaggtcattaattgttccattctgtaaatgatccagttctaattgcgttaa 12791
Query: 687 agtcaaggaatcccttaatttaattattacctgacgtcttgccttcaattgatcaagtct 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12790 agtcaaggaatcccttaatttaattattacctgacgtcttgccttcaattgatcaagtct 12731
Query: 747 atctttgacatgttcgaattcaaaatctatggattccgttgtatctttaaaattctgcat 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12730 atctttgacatgttcgaattcaaaatctatggattccgttgtatctttaaaattctgcat 12671
Query: 807 agcattgttaattcttttccaaggtccagnaaagtctttggattcttttttgcaatagac 866
||||||||||||||||| | | ||||||| ||||||||| ||||| || |||||||||||
Sbjct: 12670 agcattgttaattctttccaagggtccag-aaagtcttttgattc-ttcttgcaatagac 12613
Query: 867 tggaaagttacttcaaaatttccgaaaggga 897
| ||||||||| ||||||| |||||| ||||
Sbjct: 12612 t-gaaagttac-tcaaaatatccgaatggga 12584
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8210
Number of Sequences: 1807
Number of extensions: 8210
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)