BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC02RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1600 1509 0.0
3x_Contig1728 309 5e-84
>3x_Contig1600
Length = 9359
Score = 1509 bits (761), Expect = 0.0
Identities = 851/881 (96%)
Strand = Plus / Plus
Query: 42 aatgaagagggttcctgggtcttcaatgacgcagaagccttggaagaatttgcgattgac 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 aatgaagagggttcctgggtcttcaatgacgcagaagccttggaagaatttgcgattgac 2761
Query: 102 tggttctcgaagaatgagtaatgaacccccaaaaacgctactggcaagattgtaaaatta 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2762 tggttctcgaagaatgagtaatgaacccccaaaaacgctactggcaagattgtaaaatta 2821
Query: 162 cgttaaaaacgaacacataataggggaaagaaacagactgcttataaaatgtagtgaatt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 cgttaaaaacgaacacataataggggaaagaaacagactgcttataaaatgtagtgaatt 2881
Query: 222 ccacgtattacctttaataaattcttttgaaaaacctgacgatatatacagagtacttaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2882 ccacgtattacctttaataaattcttttgaaaaacctgacgatatatacagagtacttaa 2941
Query: 282 agacgatatgtatatagctcaaagtatttgaatcaataactgacgacatgcaaatacata 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2942 agacgatatgtatatagctcaaagtatttgaatcaataactgacgacatgcaaatacata 3001
Query: 342 atatcgtaaaacaccaaatatatgcaccttcataacacccacacgtctcacacaacatat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3002 atatcgtaaaacaccaaatatatgcaccttcataacacccacacgtctcacacaacatat 3061
Query: 402 tgggactgttttctttacttctgttttgaattacgacgcaaattaaatttcccttttgaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3062 tgggactgttttctttacttctgttttgaattacgacgcaaattaaatttcccttttgaa 3121
Query: 462 aaaattttcaaatgaaaaaaagctgtccagactctggtgatatataatcagaatacggaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3122 aaaattttcaaatgaaaaaaagctgtccagactctggtgatatataatcagaatacggaa 3181
Query: 522 agccatatttttcaacttacaactttcacagcagtagtacggtactgttcaattctactg 581
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct: 3182 agccatatttttcaacttacaactttcacagcagtagtacggtactgttaaattataatg 3241
Query: 582 tataactttgctcaaccaaccaaagcaaacgacacataaccaaaaatgaagtacattcaa 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3242 tataactttgctcaaccaaccaaagcaaacgacacataaccaaaaatgaagtacattcaa 3301
Query: 642 actgaccaagtcctagatgtcccagaaagtgttaccgttcatatcagatccagaataatc 701
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 3302 actgaccaagtcctagatgtcccagaaggtgttaccgttcaaatcagatccagaataatc 3361
Query: 702 aaggttactggaccaagaagtgtcttgactaaaatcctgaagcacatcgatgttactttc 761
|||||||||||||||||| ||||||||||||| | | ||||||||||||||||||| |||
Sbjct: 3362 aaggttactggaccaagaggtgtcttgactaagaacttgaagcacatcgatgttaccttc 3421
Query: 762 accaaaggcttttacagaacaattaagatcaccgttcacaacggtgacagaaagcacgtt 821
||||| | || | ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3422 accaaggtctctaacagacaaattaagatcaccgtccacaacggtgacagaaagcacgtt 3481
Query: 822 gctgctttgaagactggtaaatctttgatttcttacttgatcactggtgtcaacaagggg 881
|||||||||| |||| ||| |||||||||||| |||||||||||||||||| ||||||
Sbjct: 3482 gctgctttgagaactgttaagtctttgatttctaacttgatcactggtgtcaccaagggt 3541
Query: 882 taccagtacaagttggaaatcggttacgcgcatttcccaat 922
||| ||||||||||| | || ||||||||||||||||||
Sbjct: 3542 tacaagtacaagttgagatacgtttacgcgcatttcccaat 3582
>3x_Contig1728
Length = 20685
Score = 309 bits (156), Expect = 5e-84
Identities = 261/296 (88%)
Strand = Plus / Plus
Query: 627 atgaagtacattcaaactgaccaagtcctagatgtcccagaaagtgttaccgttcatatc 686
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct: 19833 atgaagtacattcaaactgaccaagtcctagatgtcccagaaggtgttaccgtccaaatc 19892
Query: 687 agatccagaataatcaaggttactggaccaagaagtgtcttgactaaaatcctgaagcac 746
|||||||||| |||||||||||||| |||||| |||| |||||||| | | ||||||||
Sbjct: 19893 agatccagaaacatcaaggttactggtccaagaggtgttttgactaagaacttgaagcac 19952
Query: 747 atcgatgttactttcaccaaaggcttttacagaacaattaagatcaccgttcacaacggt 806
||||||||||| |||||||| | || | ||||| ||| |||||||||||||||||||||
Sbjct: 19953 atcgatgttaccttcaccaaggtctctaacagacaaatcaagatcaccgttcacaacggt 20012
Query: 807 gacagaaagcacgttgctgctttgaagactggtaaatctttgatttcttacttgatcact 866
||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||
Sbjct: 20013 gacagaaagcacgttgctgctttgagaactgtcaagtctttgatttccaacttgatcact 20072
Query: 867 ggtgtcaacaaggggtaccagtacaagttggaaatcggttacgcgcatttcccaat 922
||||| | |||||| ||| ||||||||||| | || ||||||||||||||||||
Sbjct: 20073 ggtgttaccaagggttacaagtacaagttgagatacgtttacgcgcatttcccaat 20128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7934
Number of Sequences: 1807
Number of extensions: 7934
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)