BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC03FM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 1499 0.0
3x_Contig352 176 5e-44
>3x_Contig1475
Length = 10676
Score = 1499 bits (756), Expect = 0.0
Identities = 762/764 (99%)
Strand = Plus / Plus
Query: 87 ccaaagaatccaatttacgaacaataacatttctcgtagccataactttagcacctgctg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9886 ccaaagaatccaatttacgaacaataacatttctcgtagccataactttagcacctgctg 9945
Query: 147 acatggtgatcgtcaagacgacaaccaacgaagatggaatcatagaaatagcaacacaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9946 acatggtgatcgtcaagacgacaaccaacgaagatggaatcatagaaatagcaacacaaa 10005
Query: 207 tggcatagatcgcatcttgcttgttgaccctatatttttgagtacccataacgacaatgg 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10006 tggcatagatcgcaacttgcttgttgaccctatatttttgagtacccataacgacaatgg 10065
Query: 267 cgaagataacggcaacgacgaacaataaaatagccaattgagacaatttacggtgtaatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10066 cgaagataacggcaacgacgaacaataaaatagccaattgagacaatttacggtgtaatg 10125
Query: 327 gagttccgacattagtaccaaggaaagaaccgatagtctctttcaatgtgatccacaaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10126 gagttccgacattagtaccaaggaaagaaccgatagtctctttcaatgtgatccacaaat 10185
Query: 387 tttgtccaaatgatttgttttcatcctttgagatgaatgaagtttctgatttcaatgact 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10186 tttgtccaaatgatttgttttcatcctttgagatgaatgaagtttctgatttcaatgact 10245
Query: 447 ttgcaatcttaccaatttcagtgttcaaagcggtctttataacaataccagtagctctac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10246 ttgcaatcttaccaatttcagtgttcaaagcggtctttataacaataccagtagctctac 10305
Query: 507 ccttggtaacagtagatgctgcaaaggcaaggtttaaacgatcaccaacaggggtatctt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10306 ccttggtaacagtagatgctgcaaaggcaaggtttaaacgatcaccaacaggggtatctt 10365
Query: 567 tctcgtaaacttcagaatgagacttggcgactggaagcgattcaccagttaataaggctt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10366 tctcgtaaacttcagaatgagacttggcgactggaagcgattcaccagttaataaggctt 10425
Query: 627 catctgtttccaaattaattgattccaagagtctcaaatctgccggcacggtgtcaccga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10426 catctgtttccaaattaattgattccaagagtctcaaatctgccggcacggtgtcaccga 10485
Query: 687 ccttaatgatacaaatatcacccggcactaattcctttgattgaatggtgatgtcattac 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10486 ccttaatgatacaaatatcacccggcactaattcctttgattgaatggtgatgtcattac 10545
Query: 747 catctctgataacgtgagcagatggagtggatagcgatttcaacgagttcattgtcttaa 806
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10546 catctctgataacgtgagcagatggagtggatagcgatttcaacgagttcattgtcttag 10605
Query: 807 aagcattatattcttgatatgcaccgatgacgacgttgatccca 850
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10606 aagcattatattcttgatatgcaccgatgacgacgttgatccca 10649
>3x_Contig352
Length = 1459
Score = 176 bits (89), Expect = 5e-44
Identities = 257/313 (82%)
Strand = Plus / Plus
Query: 87 ccaaagaatccaatttacgaacaataacatttctcgtagccataactttagcacctgctg 146
|||||||||| |||||||||| ||||||| ||| || ||||| |||||||| ||||| |
Sbjct: 985 ccaaagaatctaatttacgaatgataacatgtctagttgccatcactttagcgcctgcag 1044
Query: 147 acatggtgatcgtcaagacgacaaccaacgaagatggaatcatagaaatagcaacacaaa 206
|||||||||| || | || || ||||| || ||||| ||||| |||| || |||||||
Sbjct: 1045 acatggtgattgttagaacaacgaccaatgacgatgggatcattgaaagtgcgacacaaa 1104
Query: 207 tggcatagatcgcatcttgcttgttgaccctatatttttgagtacccataacgacaatgg 266
|||||||||| ||| |||| ||||| ||| || | ||||||||||||||||||||||| |
Sbjct: 1105 tggcatagatggcaacttgtttgttcaccttaaacttttgagtacccataacgacaatag 1164
Query: 267 cgaagataacggcaacgacgaacaataaaatagccaattgagacaatttacggtgtaatg 326
|||| || || ||||| ||||| |||| |||||||||||||||||| |||||||| || |
Sbjct: 1165 cgaaaatgactgcaaccacgaataatagaatagccaattgagacaacttacggtgcaagg 1224
Query: 327 gagttccgacattagtaccaaggaaagaaccgatagtctctttcaatgtgatccacaaat 386
| || ||||| | || || ||||| | ||||||| ||| ||||||| ||||| || |
Sbjct: 1225 gggtaccgacgctggttcccaggaacgtgccgatagattctctcaatgtaatccataagt 1284
Query: 387 tttgtccaaatga 399
|| ||||||||||
Sbjct: 1285 ttcgtccaaatga 1297
Score = 121 bits (61), Expect = 3e-27
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 443 gactttgcaatcttaccaatttcagtgttcaaagcggtctttataacaataccagtagct 502
||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 1340 gacttcgctatcttaccaatttcagtgttcaaagctgtctttataacaataccagtcgct 1399
Query: 503 ctacccttggtaacagtagatgctgcaaaggcaaggtttaa 543
|| ||||| ||||| ||||||||||| |||||||||||||
Sbjct: 1400 ctgcccttcgtaactgtagatgctgc-gaggcaaggtttaa 1439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5937
Number of Sequences: 1807
Number of extensions: 5937
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 2
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)