BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC03RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1526 1312 0.0
>3x_Contig1526
Length = 11842
Score = 1312 bits (662), Expect = 0.0
Identities = 740/760 (97%), Gaps = 5/760 (0%)
Strand = Plus / Minus
Query: 43 gctttggctataacagaactctttaccattagagagggtattctgaacaatgcgatttaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5747 gctttggctataacagaactctttaccattagagagggtattctgaacaatgcgatttaa 5688
Query: 103 cggagaataaattgcctcaacttcagaaaagacccctgattctgtaatgaaatttgtcat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5687 cggagaataaattgcctcaacttcagaaaagacccctgattctgtaatgaaatttgtcat 5628
Query: 163 gagagttactgcatcacagaaatctacctcatcgaatagttgtgagttgcgcacatttct 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5627 gagagttactgcatcacagaaatctacctcatcgaatagttgtgagttgcgcacatttct 5568
Query: 223 attccagtcatttaataggtagattgcgttcatattaatagtcgacatcaagtatggaga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5567 attccagtcatttaataggtagattgcgttcatattaatagtcgacatcaagtatggaga 5508
Query: 283 aacttctccaagcaaggacatgtcgtgtaaggcaacaagagattgaagctttgataatct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5507 aacttctccaagcaaggacatgtcgtgtaaggcaacaagagattgaagctttgataatct 5448
Query: 343 tggggaaatgaatgctgataacggtatctttgacattgaagtagcatccagttgtaaaga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5447 tggggaaatgaatgctgataacggtatctttgacattgaagtagcatccagttgtaaaga 5388
Query: 403 gcgtagtcttgcttcaacttcgctttcagtcccaacttgtgacgagcactcgattcctat 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5387 gcgtagtcttgcttcaacttcgctttcagtcccaacttgtgacgagcactcgattcctag 5328
Query: 463 gatttttctatcttgagtcgatgctcgaacaggaagatcattgatgaaaacctctattcc 522
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5327 gatttttctatcttgagtcgatgctcgaacaggaagagcattgatgaaaacctctattcc 5268
Query: 523 tctatttctcatagctcttgaaagttctccaaatttaagatccatagttaagaataatct 582
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5267 tctatttctcatagctcttgaaagttctccaaatttaggatccatagttaagaataatct 5208
Query: 583 anaatcgcgatgtggctttaccactctgggttttccatcngtcaaactacattcgtttat 642
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5207 aaaatcgcgatgtggctttaccactctgggttttccatcggtcaaactacattcgtttat 5148
Query: 643 cattcaaaga-ccatctgtttcttatagtgaattgattctatcgagaactgatggagagc 701
||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5147 cat-caaagaaccatctgtttctaatagtgaattgattctatcgagaactgatggagagc 5089
Query: 702 aaagattggcattgtcttaaatcaaccaatgacccttcttcccatcccttgattatcata 761
||||||||||||||||| |||||||||||||||||| || | || |||||| || ||||
Sbjct: 5088 aaagattggcattgtctaaaatcaaccaatgaccctcctccaca-gccttgactagcata 5030
Query: 762 ccgtcaaaccatttcaaatttaccggctgtcaggcttttt 801
||||||||||| ||||||||| |||||| ||||||||||
Sbjct: 5029 ccgtcaaacca-ttcaaatttcacggctg-caggcttttt 4992
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6864
Number of Sequences: 1807
Number of extensions: 6864
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)