BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC04FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 1156 0.0
>3x_Contig1666
Length = 16162
Score = 1156 bits (583), Expect = 0.0
Identities = 782/835 (93%), Gaps = 10/835 (1%)
Strand = Plus / Minus
Query: 87 taacgttatcagcaaagtaattgtctccacactgtacaaccctctgtcgacataatcacc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15553 taacgttatcagcaaagtaattgtctccacactgtacaaccctctgtcgacataatcacc 15494
Query: 147 caaaaacacgtaatttgtggacggcagaggtccaccaatatggaatatctctaaaagatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15493 caaaaacacgtaatttgtggacggcagaggtccaccaatatggaatatctctaaaagatc 15434
Query: 207 atggaattgaccgtgaatgtcaccaacaacagtcacaggcgtactgatatgaacaacatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15433 atggaattgaccgtgaatgtcaccaacaacagtcacaggcgtactgatatgaacaacatt 15374
Query: 267 agattctctcactagcaattcctttaatttgaaacacaacgccctgatcgtctcagcagg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15373 agattctctcactagcaattcctttaatttgaaacacaacgccctgatcgtctcagcagg 15314
Query: 327 aagtagtttcccctcatatagctgttccaaacaccaatcgagttccataaatatgatatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15313 aagtagtttcccctcatatagctgttccaaacaccaatcgagttccataaatatgatatg 15254
Query: 387 taatatcctcagtacggattgaaattttttgacagctcactaatgggatattttatcctc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15253 taatatcctcagtacggattgaaattttttgacagctcactaatgggatattttatcctc 15194
Query: 447 ccttaatgcatggatcccaacgctagctagaataccttaagatgcccaacagataaacct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15193 ccttaatgcatggatcccaacgctagctagaataccttaagatgcccaacagataaacct 15134
Query: 507 taccacctagcgatgagtcgttcaccccatattctttgtttagcaaactttacggctgga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15133 taccacctagcgatgagtcgttcaccccatattctttgtttagcaaactttacggctgga 15074
Query: 567 aagatttcaacttttctttgtaaaaatcaataacattaaaa-aaaaaaaattatcatggt 625
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 15073 aagatttcaacttttctttgtaaaaatcaataacattaaaaaaaaaaaaattatcatgtc 15014
Query: 626 cagaaccaaattaaaaggtcataaggtccgagcaaagtagcttaagtgtgccaaccattc 685
|||||||||||||| | ||||| | ||||||||||||||| |||||||||| ||||||
Sbjct: 15013 aagaaccaaattaaaggttcataggtaccgagcaaagtagctaaagtgtgccagccattc 14954
Query: 686 cgattaggacagcgacgagatcggtattaagaaaaggtattattgcctagaaacacaact 745
|||||| ||||||||||||||| ||| |||| | | ||| ||||| ||||||||||||
Sbjct: 14953 ggattagaacagcgacgagatcgttataaagataggttataattgctaagaaacacaact 14894
Query: 746 tgtgttgccgcaaacctgaaataaaagggaatttgcttttgtaatttttcgggcttactt 805
||| ||| |||||| ||||| |||||| |||||| ||||||| |||||||| |||||
Sbjct: 14893 ggtg-tgcggcaaactcgaaat-aaaggggatttgc-tttgtaa-ttttcggggctactt 14838
Query: 806 ggcaaattcattggcttataaggcatttcttccggggctttcagaatattccccattctt 865
| | ||||||||| | ||||||| ||||||| || ||||||| | ||| | || ||||
Sbjct: 14837 gtc-aattcattgtc-tataagggcattcttcccggtctttcag-agattacacaatctt 14781
Query: 866 aaagaagaaagggaattgggtggaattttttaagggcccacttttacctttgtac 920
|| |||||||| ||||| ||||| ||||||||| || |||||||||| |||||||
Sbjct: 14780 aaggaagaaagagaatt-ggtgg-attttttaaagggccacttttacgtttgtac 14728
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,500
Number of Sequences: 1807
Number of extensions: 12500
Number of successful extensions: 132
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)