BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC04RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1334 0.0
>3x_Contig1787
Length = 34189
Score = 1334 bits (673), Expect = 0.0
Identities = 701/709 (98%), Gaps = 1/709 (0%)
Strand = Plus / Minus
Query: 48 tacaaaaccagttaaagcagttctggtcggaactatcttcgaaaatcaatctcagtaaca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842 tacaaaaccagttaaagcagttctggtcggaactatcttcgaaaatcaatctcagtaaca 3783
Query: 108 tagttctcaatgattaaaacgtaactactttattctgtcgtcatgtcaatctaagtttga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3782 tagttctcaatgattaaaacgtaactactttattctgtcgtcatgtcaatctaagtttga 3723
Query: 168 atatttaagcaggggagccttgaaaagtgcgttctacatgacgaatgaatatgtgtcatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3722 atatttaagcaggggagccttgaaaagtgcgttctacatgacgaatgaatatgtgtcatg 3663
Query: 228 tgattaactcagcctttctgacttcgataatgagccaatccaaaattgacttgaattatt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3662 tgattaactcagcctttctgacttcgataatgagccaatccaaaattgacttgaattatt 3603
Query: 288 ccttccaaaatacgattgtgcaaatgactcgacaaaacccgcctttttttaacttggaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3602 ccttccaaaatacgattgtgcaaatgactcgacaaaacccgcctttttttaacttggaca 3543
Query: 348 cttcgtgtaaagtgattgcttatggaagtatatctccgagaaagtatctccggaagatca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3542 cttcgtgtaaagtgattgcttatggaagtatatctccgagaaagtatctccggaagatca 3483
Query: 408 tctccattcaaatagcattgtgagtatttcatgcaggtcccaacacggctgttggctgca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3482 tctccattcaaatagcattgtgagtatttcatgcaggtcccaacacggctgttggctgca 3423
Query: 468 ttagtaccgttgaggaatgattcattgcgtgcaaaggcaagatacttaagttcgagaggg 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3422 ttagtaccgttgaggaatgattcattgcgtgcaaaggcaagatacttaagttcgagaggt 3363
Query: 528 ttaaacgttatacccttacaaggccctattttgtcagctctaggtctgcatttgattgaa 587
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3362 ttaaacgttataccctaacaaggccctattttgtcagctctaggtctgcaattgattgaa 3303
Query: 588 taatgagtctgatgactgttatgaattagtatgtgaaaaatttttctccaaggtatagat 647
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3302 taatgagtctgatgactgttatgaattagtatgtgaaaaattttcctccaaggtatagaa 3243
Query: 648 aaaaagc-aaaatagtttaattactacatggattaattaattcaatgtgtgggaatcagt 706
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3242 aaaaagcaaaaatagtttaattactacatggattaattaattcaatgtgtgggaatcagt 3183
Query: 707 gtggaatcgttattgaacgtgatgagtaattccaagtgtctcatttttt 755
||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3182 gtgaaatcgtaattgaacgtgatgagtaattccaagtgtctcatttttt 3134
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6474
Number of Sequences: 1807
Number of extensions: 6474
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)