BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC38ZC05RM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1411                                                        1154   0.0  

>3x_Contig1411 
          Length = 7271

 Score = 1154 bits (582), Expect = 0.0
 Identities = 642/658 (97%), Gaps = 3/658 (0%)
 Strand = Plus / Plus

                                                                        
Query: 46   gcttcgatatatacaacgtacatccgttgaaacgtatcatgagtcaagagatgcccgatg 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5376 gcttcgatatatacaacgtacatccgttgaaacgtatcatgagtcaagagatgcccgatg 5435

                                                                        
Query: 106  ctggtaccatcagaatgttgcatcgcacaaactacattgcatttgttagtacaaagaaag 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5436 ctggtaccatcagaatgttgcatcgcacaaactacattgcatttgttagtacaaagaaag 5495

                                                                        
Query: 166  agttacttcatatttgggatgacgttaagaaacaagatatcacaagagttaagctcgatg 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5496 agttacttcatatttgggatgacgttaagaaacaagatatcacaagagttaagctcgatg 5555

                                                                        
Query: 226  ctgctgttaaggacttgtttctttcaagggagtttatagtagtatcacagggcgatgtga 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5556 ctgctgttaaggacttgtttctttcaagggagtttatagtagtatcacagggcgatgtga 5615

                                                                        
Query: 286  tatccattttcaagtttggtaacccctggaataagattactgaagacattaagttcggag 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5616 tatccattttcaagtttggtaacccctggaataagattactgaagacattaagttcggag 5675

                                                                        
Query: 346  gagtgtgcgagtttgccaatggattgttggtgtactccaatgagttcaatctgggtcaga 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5676 gagtgtgcgagtttgccaatggattgttggtgtactccaatgagttcaatctgggtcaga 5735

                                                                        
Query: 406  tccacgtaactagattgcagaccgatgcagagcaggttgttggaaaaggtgtcctattga 465
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5736 tccacgtaactagattgcagaccgatgcagagcaggttgttggaaaaggtgtcctagtga 5795

                                                                        
Query: 466  aggcccatgccaatccagtgaaaatggtaagattaaataggaaaggagacatggttgcca 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5796 aggcccatgccaatccagtgaaaatggtaagattaaataggaaaggagacatggttgcca 5855

                                                                        
Query: 526  cttgttcgcaggatggaacgctaattagagtttttcaaacggacaatggagtcttggttc 585
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5856 cttgttcgcaggatggaacgctaattagagttttccaaacggacaatggagtcttggttc 5915

                                                                        
Query: 586  gagagtttttgatgatgactggacagaactagtattattgatttgcgttggtcaccagat 645
            ||||| ||| || || |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 5916 gagag-tttagaagaggactggacagaactagtattatagatatgcgttggtcaccagat 5974

                                                                      
Query: 646  ggatcataa-tagcttgtgtcaatgacaaatggacgtt-cacgttttttaagggttca 701
            |||||| || |||||  ||||| ||||||||||||||| ||||||||| ||| |||||
Sbjct: 5975 ggatcaaaattagctgttgtcagtgacaaatggacgttacacgtttttgaagtgttca 6032


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6478
Number of Sequences: 1807
Number of extensions: 6478
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)