BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC06FM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1174 1522 0.0
>3x_Contig1174
Length = 6106
Score = 1522 bits (768), Expect = 0.0
Identities = 808/816 (99%), Gaps = 4/816 (0%)
Strand = Plus / Plus
Query: 84 cagtgaagctgcatgacgacgaagttgccatgttaaaacgccatcggagtgggaaaaaag 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4921 cagtgaagctgcatgacgacgaagttgccatgttaaaacgccatcggagtgggaaaaaag 4980
Query: 144 agaagaaacctaaaaagaagaagaagcggaaggtggctaacgataatccgaacagcatac 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4981 agaagaaacctaaaaagaagaagaagcggaaggtggctaacgataatccgaacagcatac 5040
Query: 204 acttgaagaaagtaggattgagtcccgaattacaagaattcttaaaagtggaagagatgc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 acttgaagaaagtaggattgagtcccgaattacaagaattcttaaaagtggaagagatgc 5100
Query: 264 ccagaacacaagtcgttaaatctgtttgggactacattaaggagcatgaccttcagaacc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5101 ccagaacacaagtcgttaaatctgtttgggactacattaaggagcatgaccttcagaacc 5160
Query: 324 cggaggaccgaagggaaatcatatgtgatgatgccatgaaacccatttttggtgagaaga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5161 cggaggaccgaagggaaatcatatgtgatgatgccatgaaacccatttttggtgagaaga 5220
Query: 384 tgaccatgttcacgttgaataaaatactctcgaagcatttattcaaccttgcaaaatcag 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5221 tgaccatgttcacgttgaataaaatactctcgaagcatttattcaaccttgcaaaatcag 5280
Query: 444 aaaaagacgaaatcactgaacagcatagcgacttagagccttgacattaacaatatatat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5281 aaaaagacgaaatcactgaacagcatagcgacttagagccttgacattaacaatatatat 5340
Query: 504 ataatgctaaatagctcccgccatatcttattgtatcattatcgacaccacgcttatttt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5341 ataatgctaaatagctcccgccatatcttattgtatcattatcgacaccacgcttatttt 5400
Query: 564 actcgtctttatcctctaacttttatgtcttggcatctaattatgtaccatcgatctgta 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5401 actcgtctttatcctctaacttttatgtcttggcatctaattatgtaccatcgatctgta 5460
Query: 624 tctaaattcttgaagagtccgcctttatgaaacttggatctctaataaacaaaacaaata 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5461 tctaaattcttgaagagtccgcctttatgaaacttggatctctaataaacaaaacaaata 5520
Query: 684 cataagaacgaaccttaaaagacacaaaccgaccaaaatagcggacagtttcggtaggcg 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5521 cataagaacgaaccttaaaagacacaaaccgaccaaaatagcggacagtttcggtaggcg 5580
Query: 744 aatgtatccatgaaccagtttatgatattatccacangatttcttcg-tttctacccctt 802
|| ||||||||||||||||||| ||||||||||||| || ||||||| ||||||||||||
Sbjct: 5581 aaggtatccatgaaccagtttaggatattatccaca-ga-ttcttcgttttctacccctt 5638
Query: 803 cactgggagaaacgtttgactttgttccctt-gacactggttattctttatgcgatgacc 861
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5639 cactgggagaaacgtttgactttgttcccttggacactggttattctttatgcgatgacc 5698
Query: 862 ttgatctgttatacttcaacgtattaaaggtagttt 897
|||||||| |||||| ||||||||||||||||||||
Sbjct: 5699 ttgatctggtatactccaacgtattaaaggtagttt 5734
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9107
Number of Sequences: 1807
Number of extensions: 9107
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)