BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC06RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig189 1431 0.0
>3x_Contig189
Length = 1476
Score = 1431 bits (722), Expect = 0.0
Identities = 775/786 (98%), Gaps = 5/786 (0%)
Strand = Plus / Plus
Query: 48 cctggcctatacgaattcatatcgaaagattctctggtaagagtaggtatcaagagtgta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cctggcctatacgaattcatatcgaaagattctctggtaagagtaggtatcaagagtgta 752
Query: 108 aaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacctaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacctaca 812
Query: 168 aaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggctcgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggctcgt 872
Query: 228 tgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgagagcta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgagagcta 932
Query: 288 atcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgagtaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 atcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgagtaaa 992
Query: 348 gtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttcacaca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 gtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttcacaca 1052
Query: 408 ttgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgagacggt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 ttgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgagacggt 1112
Query: 468 gatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggcatctg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 gatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggcatctg 1172
Query: 528 aaagcaattgcgtcgttaattcatggactatggttttggcaggaatacaatgggctaata 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 aaagcaattgcgtcgttaattcatggactatggttttggcaggaatacaatgggctaata 1232
Query: 588 gatcataatttatggaacggcattctacaaggttattaacagttctttctttt-atattt 646
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1233 gatcataattcatggaacggcattctacaaggttattaacagttctttcttttaatattt 1292
Query: 647 tcctagccattttatggatcaccaattgccaatcaggtctggtc-aaggtgtatcgtttc 705
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1293 tcctagccattttatggatcaccaattgccaatcaggtctgttcaaaggtgtatcgtttc 1352
Query: 706 ttaaatgc-attcattttgtagtgaagtagattctagtgctaagagtgacattctcaagt 764
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1353 ttaaatgcaattcattttgtagtgaggtagattctagtgctaagagtgacattctcaagt 1412
Query: 765 tcccctttgacagattcgcttatcctctctaaaccattggccttcggcagttattttttc 824
||||||||||||||||||| ||||||||||| || ||| ||| |||||||||||||||||
Sbjct: 1413 tcccctttgacagattcgc-tatcctctctagacaatt-gccctcggcagttattttttc 1470
Query: 825 tttgga 830
||||||
Sbjct: 1471 tttgga 1476
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6863
Number of Sequences: 1807
Number of extensions: 6863
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)