BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC38ZC07RM1.SCF screened BAC_end
         (960 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1033                                                        1140   0.0  

>3x_Contig1033 
          Length = 4240

 Score = 1140 bits (575), Expect = 0.0
 Identities = 668/691 (96%), Gaps = 6/691 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   catgatatttagcctatcaatggtgcccttcaaaaggcaaaagtacaatgtctttgagct 107
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1249 catgatatttagcctatcaatgg-gcccttcaaaaggcaaaagtacaatgtctttgagct 1307

                                                                        
Query: 108  cagatacgaaatttgagagtaagttatgttccaaaagaacatctagggcagcagcatctc 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 cagatacgaaatttgagagtaagttatgttccaaaagaacatctagggcagcagcatctc 1367

                                                                        
Query: 168  tcaaaatcagttgctgtctaacagcagctaaatactgttccgatgctaagtatatcacca 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1368 tcaaaatcagttgctgtctaacagcagctaaatactgttccgatgctaagtatatcacca 1427

                                                                        
Query: 228  ccaaacaccgcctgaggatcggcgtgtcttttatttgaagtgcatcttctatttgatcgg 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1428 ccaaacaccgcctgaggatcggcgtgtcttttatttgaagtgcatcttctatttgatcgg 1487

                                                                        
Query: 288  taattaggactgtgtcatacaagaagtgactccaggtgcttagaaggtgaagtaattctg 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1488 taattaggactgtgtcatacaagaagtgactccaggtgcttagaaggtgaagtaattctg 1547

                                                                        
Query: 348  tatagcgacttttttttaagtaccatgttagaactgtagtataaacgttgtagtctaata 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1548 tatagcgacttttttttaagtaccatgttagaactgtagtataaacgttgtagtctaata 1607

                                                                        
Query: 408  ctggggaagtgggtatagtatcaactacttcatcagttttgtcatgtttaataaatgcta 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1608 ctggggaagtgggtatagtatcaactacttcatcagttttgtcatgtttaataaatgcta 1667

                                                                        
Query: 468  aaatgtacatcccccatttgctaattttgaagtttgacaactcctcactcttctcgggtg 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1668 aaatgtacatcccccatttgctaattttgaagtttgacaactcctcactctcctcgggtg 1727

                                                                        
Query: 528  tttctttaaatatcgtagcaatggcaccagacgcattcgtccagctgtttttcggaaaca 587
            |||||| ||||||||||||||||||||||||||||| ||||||||||||||  | |||||
Sbjct: 1728 tttcttcaaatatcgtagcaatggcaccagacgcatccgtccagctgttttcggaaaaca 1787

                                                                        
Query: 588  aaagaatcatatacttgaggccaaccacgattcgatccatagggg-aaccgcatagtttc 646
            |||||   |||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct: 1788 aaagatcaatatacttgaggccaaccacgagtcgatccataggggaaaccgcatagttcc 1847

                                                                        
Query: 647  cgattttcccagcttttacatacaacttctttgtcaacggtaccaattaaagcgattcaa 706
            |||||| || |||||| |||||||||||| |||||||| |||||||||||||||| ||||
Sbjct: 1848 cgatttcccaagctttaacatacaacttc-ttgtcaac-gtaccaattaaagcga-tcaa 1904

                                           
Query: 707  cccacgaggagctttttcggaataatagcat 737
            || |||| ||||| ||||| |||||||||||
Sbjct: 1905 ccaacga-gagctctttcgtaataatagcat 1934


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8734
Number of Sequences: 1807
Number of extensions: 8734
Number of successful extensions: 148
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)