BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC38ZC07RM1.SCF screened BAC_end (960 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1033 1140 0.0 >3x_Contig1033 Length = 4240 Score = 1140 bits (575), Expect = 0.0 Identities = 668/691 (96%), Gaps = 6/691 (0%) Strand = Plus / Plus Query: 48 catgatatttagcctatcaatggtgcccttcaaaaggcaaaagtacaatgtctttgagct 107 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1249 catgatatttagcctatcaatgg-gcccttcaaaaggcaaaagtacaatgtctttgagct 1307 Query: 108 cagatacgaaatttgagagtaagttatgttccaaaagaacatctagggcagcagcatctc 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1308 cagatacgaaatttgagagtaagttatgttccaaaagaacatctagggcagcagcatctc 1367 Query: 168 tcaaaatcagttgctgtctaacagcagctaaatactgttccgatgctaagtatatcacca 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1368 tcaaaatcagttgctgtctaacagcagctaaatactgttccgatgctaagtatatcacca 1427 Query: 228 ccaaacaccgcctgaggatcggcgtgtcttttatttgaagtgcatcttctatttgatcgg 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1428 ccaaacaccgcctgaggatcggcgtgtcttttatttgaagtgcatcttctatttgatcgg 1487 Query: 288 taattaggactgtgtcatacaagaagtgactccaggtgcttagaaggtgaagtaattctg 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1488 taattaggactgtgtcatacaagaagtgactccaggtgcttagaaggtgaagtaattctg 1547 Query: 348 tatagcgacttttttttaagtaccatgttagaactgtagtataaacgttgtagtctaata 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1548 tatagcgacttttttttaagtaccatgttagaactgtagtataaacgttgtagtctaata 1607 Query: 408 ctggggaagtgggtatagtatcaactacttcatcagttttgtcatgtttaataaatgcta 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1608 ctggggaagtgggtatagtatcaactacttcatcagttttgtcatgtttaataaatgcta 1667 Query: 468 aaatgtacatcccccatttgctaattttgaagtttgacaactcctcactcttctcgggtg 527 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1668 aaatgtacatcccccatttgctaattttgaagtttgacaactcctcactctcctcgggtg 1727 Query: 528 tttctttaaatatcgtagcaatggcaccagacgcattcgtccagctgtttttcggaaaca 587 |||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||| Sbjct: 1728 tttcttcaaatatcgtagcaatggcaccagacgcatccgtccagctgttttcggaaaaca 1787 Query: 588 aaagaatcatatacttgaggccaaccacgattcgatccatagggg-aaccgcatagtttc 646 ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| | Sbjct: 1788 aaagatcaatatacttgaggccaaccacgagtcgatccataggggaaaccgcatagttcc 1847 Query: 647 cgattttcccagcttttacatacaacttctttgtcaacggtaccaattaaagcgattcaa 706 |||||| || |||||| |||||||||||| |||||||| |||||||||||||||| |||| Sbjct: 1848 cgatttcccaagctttaacatacaacttc-ttgtcaac-gtaccaattaaagcga-tcaa 1904 Query: 707 cccacgaggagctttttcggaataatagcat 737 || |||| ||||| ||||| ||||||||||| Sbjct: 1905 ccaacga-gagctctttcgtaataatagcat 1934 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8734 Number of Sequences: 1807 Number of extensions: 8734 Number of successful extensions: 148 Number of sequences better than 1.0e-20: 1 length of query: 960 length of database: 10,358,551 effective HSP length: 16 effective length of query: 944 effective length of database: 10,329,639 effective search space: 9751179216 effective search space used: 9751179216 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)