BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC08RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1160 0.0
>3x_Contig1451
Length = 8346
Score = 1160 bits (585), Expect = 0.0
Identities = 658/673 (97%), Gaps = 7/673 (1%)
Strand = Plus / Minus
Query: 46 ctttaaatctttgtaacactttattgagactttcatccttgataactaaaggttcattaa 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctttaaatctttgtaacactttattgagactttcatccttgataactaaaggttcattaa 608
Query: 106 ttacctgttgcgaggtgttgccattctctgatgacacttgttg-aacaaactggaaagcc 164
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 607 ttacctgttgcgaggtgttgccattctctgatgacacttgttgtaacaaactggaaagcc 548
Query: 165 tcttcttcctttcttctgcatcctctttcacagatccatttttattctttgaacggcgtt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcttcttcctttcttctgcatcctctttcacagatccatttttattctttgaacggcgtt 488
Query: 225 tattagccttggctttctttaccatagtgcaatatctggtgggcagttgactgttgttat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tattagccttggctttctttaccatagtgcaatatctggtgggcagttgactgttgttat 428
Query: 285 attaataagcagtcgagccagaatactattgtatgctcatctgtcaatttgcctttttta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 attaataagcagtcgagccagaatactattgtatgctcatctgtcaatttgcctttttta 368
Query: 345 tgtcctttattaagaccacatatatttttcaattaaatgttgaaatttataccattatat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgtcctttattaagaccacatatatttttcaattaaatgttgaaatttataccattatat 308
Query: 405 tatacgtgaacagatatggcaacattcaacggtcttgtatacatgtgatagatgctatat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tatacgtgaacagatatggcaacattcaacggtcttgtatacatgtgatagatgctatat 248
Query: 465 gactatggataataacgaatcactcttctaaattcttgagtctatcgttgattgaatcgg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gactatggataataacgaatcactcttctaaattcttgagtctatcgttgattgaatcgg 188
Query: 525 cgaatttgttaaattgtacatcatcgtcattcactttccgcagtaagtcctgtaactttt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cgaatttgttaaattgtacatcatcgtcattcactttccgcagtaagtcctgtaactttt 128
Query: 585 gctgaatatttgaggctatctcaaacacggtgggaacatctttctttggattaccactat 644
||||||||| ||| |||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 127 gctgaatatctgaagctatctcaaacacggtgggaacatcttcgttggaattaccacta- 69
Query: 645 ttttctgatcctttttggttcanggggtaacaatttggttgtggtccaaatcatcttttt 704
||||||||||| |||||||||| |||||||||| |||||||| ||| |||||||| ||||
Sbjct: 68 ttttctgatcc-ttttggttca-ggggtaacaa-ttggttgt-gtcgaaatcatc-tttt 14
Query: 705 gaagggatgactg 717
|||| ||||||||
Sbjct: 13 gaagtgatgactg 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8733
Number of Sequences: 1807
Number of extensions: 8733
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)