BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC10RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 827 0.0
>3x_Contig1584
Length = 9710
Score = 827 bits (417), Expect = 0.0
Identities = 463/476 (97%), Gaps = 2/476 (0%)
Strand = Plus / Minus
Query: 47 ccctccagctagtattgacgcaatactatttgatacgttcataggctgactttgcatacc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2751 ccctccagctagtattgacgcaatactatttgatacgttcataggctgactttgcatacc 2692
Query: 107 agttgatggactgttcggtacttcaaactgagcagcaaatttctctgaattcgttaatgt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2691 agttgatggactgttcggtacttcaaactgagcagcaaatttctctgaattcgttaatgt 2632
Query: 167 catcaactgtggaagcaagtatggttgttgttggatttgatgatgcaaatgttgcaaaaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2631 catcaactgtggaagcaagtatggttgttgttggatttgatgatgcaaatgttgcaaaaa 2572
Query: 227 gttcgagttctgtgctattggtggcaggagcaggttatcttgtcccatagcttgtttatt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2571 gttcgagttctgtgctattggtggcaggagcaggttatcttgtcccatagcttgtttatt 2512
Query: 287 gggactagcagcagcgcttctttcgctcttaactttcacgttctgatcttgctgttgaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2511 gggactagcagcagcgcttctttcgctcttaactttcacgttctgatcttgctgttgaag 2452
Query: 347 ctgttgttgttgttgctgttgctgctgtcgtacctgttgatgttgntgttgatgttggtc 406
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 2451 ctgttgttgttgttgctgttgctgctgtcgtacctgttgatgttgttgttgatgttgttc 2392
Query: 407 taattctgcgtctgcctttatggtatttaccaagatatcgacctggttcaaa-atattag 465
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct: 2391 taattctgcgtctgccttcatggtatttaccaagatatcgacctggttcaaagatatagg 2332
Query: 466 ttcatttggattgcttacagtggcaagcttttgacacttttaatgattgctttggc 521
|||| ||||| |||| ||||||||| || |||||||||||| |||| |||||||||
Sbjct: 2331 ttcagttggagtgctgacagtggcaggc-tttgacacttttgatgaatgctttggc 2277
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,342
Number of Sequences: 1807
Number of extensions: 35342
Number of successful extensions: 1371
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)