BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC11FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig333 472 e-133
3x_Contig1284 464 e-130
>3x_Contig333
Length = 1390
Score = 472 bits (238), Expect = e-133
Identities = 362/398 (90%), Gaps = 4/398 (1%)
Strand = Plus / Minus
Query: 483 cgcttgaacatttttctttccgtttgagctctcacacattgtgcgcatagtccactgaaa 542
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1387 cgcttgaacatttttctttccgttggagctctcacacattgtgcgcatagtccactgaaa 1328
Query: 543 ttcggtattttgaaattttgaaatttaagactaaaaatcaaaactcatcatcatacggac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 ttcggtattttgaaattttgaaatttaagactaaaaatcaaaactcatcatcatacggac 1268
Query: 603 gacagacaacatccagtcatttcaagaatttactgaaacttgaaaggattcaaaaacatt 662
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 1267 gacagacaacatccagtcatttcaagaatttactgaaacttgaagggattcaaaaacaat 1208
Query: 663 ac-agatagatagcgctttattaggcagaggcacaaattgatagtcgactgttatcaaga 721
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1207 accagatagatagcgctttaataggcagaggcacaaatagatagtcgactgttatcaaga 1148
Query: 722 tttcaag-agtatcagttggaattatccgccccttcttaattttatccctttcagctttt 780
||||||| ||||||||||| | ||||| || | | |||||||||| |||||||||||||
Sbjct: 1147 tttcaaggagtatcagttgtatttatctgctcttctttaattttattcctttcagctttt 1088
Query: 781 gtttcaaacatttttgaaaagttgggtccaattctcccgaccagagaaaggattccgaat 840
||| || ||| |||| |||||| ||| |||| || |||||||||| ||| | || |
Sbjct: 1087 gtt-cagacagtttttgaaagtttggtacaatatcccagaccagagaagcgatacaga-t 1030
Query: 841 tttgatttaactttaaaagtagggttgccggtatattt 878
| ||||||||||||| ||||||| |||| | |||||||
Sbjct: 1029 tctgatttaactttacaagtaggtttgcggatatattt 992
>3x_Contig1284
Length = 6170
Score = 464 bits (234), Expect = e-130
Identities = 234/234 (100%)
Strand = Plus / Plus
Query: 87 cacatcgaccatatggccaaagccaggctatagaaaagcccaaaatctggttacgactaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5937 cacatcgaccatatggccaaagccaggctatagaaaagcccaaaatctggttacgactaa 5996
Query: 147 tatcgacatagcgaattatctttttcacaaccgaagaagaacctatcgcagtttttttgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5997 tatcgacatagcgaattatctttttcacaaccgaagaagaacctatcgcagtttttttgt 6056
Query: 207 gctttatttctgggatttcggagtactgtttgatattctggtgtgaatctgcggttggaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6057 gctttatttctgggatttcggagtactgtttgatattctggtgtgaatctgcggttggaa 6116
Query: 267 ccatcagacatcaagagccaattgttcatccttcacttttagtctttctcaagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6117 ccatcagacatcaagagccaattgttcatccttcacttttagtctttctcaagt 6170
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8312
Number of Sequences: 1807
Number of extensions: 8312
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)