BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC11RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1392 0.0
>3x_Contig1529
Length = 11812
Score = 1392 bits (702), Expect = 0.0
Identities = 752/762 (98%), Gaps = 5/762 (0%)
Strand = Plus / Plus
Query: 48 agaaagaagagtaaggcaaaacttcttcattcaagtagtatgggtggatctgctgggtta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agaaagaagagtaaggcaaaacttcttcattcaagtagtatgggtggatctgctgggtta 506
Query: 108 aaacatccaaattacaaggcagtgaacaagaattcaagagttttgttgaaggaatatata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaacatccaaattacaaggcagtgaacaagaattcaagagttttgttgaaggaatatata 566
Query: 168 aacaaatgcaataatgcatccgcaagttgcaaaaagttagccaagagactaaaaatttca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aacaaatgcaataatgcatccgcaagttgcaaaaagttagccaagagactaaaaatttca 626
Query: 228 gatagagaccagctacaaagggtccttgaagagaaacacaaagatttattggagcaactg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gatagagaccagctacaaagggtccttgaagagaaacacaaagatttattggagcaactg 686
Query: 288 ccgaattttgaaactttctcctccatgttcgaagatatatggtgtccatacatgaaagaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ccgaattttgaaactttctcctccatgttcgaagatatatggtgtccatacatgaaagaa 746
Query: 348 ttgttgaacatcccagataatcacaaagttggaaatccattacctttgaactctcagcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttgttgaacatcccagataatcacaaagttggaaatccattacctttgaactctcagcaa 806
Query: 408 actttgatcaagctctctatggctgattataacgggtgtaagttgaaggtatctaaatcc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 actttgatcaagctctctatggctgattataacgggtgtaagttgaaggtatctaaatcc 866
Query: 468 aaaaacaagtcattaactgggaaaaatggtattgtaatatgggatgctcaaaagacattc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 aaaaacaagtcattaactgggaaaaatggtattgtaatatgggatgctcaaaagacattc 926
Query: 528 ataatcataacgaaaggcggattagtcgatgaattgaaaagcataccgaagataggaaca 587
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 927 ataatcataacgaaaggcggattagtcgatgaattgaaaagcataccgaagaaaggaaca 986
Query: 588 actttcgatttcgagattccaatcaatgaagaagaatctttagcctatacaattcttgtt 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 987 actttcgatttcgagattccaatcaatgaagaagaatctttagcctatacaattcttggt 1046
Query: 648 gatagatttaaatatagaagtgttgatagagccggtagaaaatttaagagtcgccgttgc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 gatagatttaaatatagaagtgttgatagagccggtagaaaatttaagagtcgccgttgc 1106
Query: 708 gatgacctattat-ttacattagttaacgaag-aaaatat-tatgtagcagccttgctac 764
||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 1107 gatgacctattatattacattagttaacgaagtaaaatatatatgtagcagccttgctac 1166
Query: 765 tttatctgttc-atcaactatta-tagttttgccttaaagga 804
||||||||||| ||||||||| | |||||||| ||| |||||
Sbjct: 1167 tttatctgttcaatcaactatcattagttttggcttcaagga 1208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8610
Number of Sequences: 1807
Number of extensions: 8610
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)