BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZC12RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1033 0.0
>3x_Contig1584
Length = 9710
Score = 1033 bits (521), Expect = 0.0
Identities = 719/769 (93%), Gaps = 12/769 (1%)
Strand = Plus / Minus
Query: 45 cttccctcc-gctagtattgacgcaatactatttgatacgttcataggctgactttgcat 103
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2754 cttccctccagctagtattgacgcaatactatttgatacgttcataggctgactttgcat 2695
Query: 104 accagttgatggactgttcggtacttcaaactgagcagcaaatttctctgaattcgttaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2694 accagttgatggactgttcggtacttcaaactgagcagcaaatttctctgaattcgttaa 2635
Query: 164 tgtcatcaactgtggaagcaagtatggttgttgttggatttgatgatgcaaatgttgcaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2634 tgtcatcaactgtggaagcaagtatggttgttgttggatttgatgatgcaaatgttgcaa 2575
Query: 224 aaagttcgagttctgtgctattggtggcaggagcaggttatcttgtcccatagcttgttt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 aaagttcgagttctgtgctattggtggcaggagcaggttatcttgtcccatagcttgttt 2515
Query: 284 attgggactagcagcagcgcttctttcgctcttaactttcacgttctgatcttgctgttg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2514 attgggactagcagcagcgcttctttcgctcttaactttcacgttctgatcttgctgttg 2455
Query: 344 aagctgttgttgttgttgctgttgctgctgtcgtacctgttgatgttgttgttgatgttg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2454 aagctgttgttgttgttgctgttgctgctgtcgtacctgttgatgttgttgttgatgttg 2395
Query: 404 ttctaattctgcgtctgccttcatggtatttaccaagatatcgacctggttcaaagatat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2394 ttctaattctgcgtctgccttcatggtatttaccaagatatcgacctggttcaaagatat 2335
Query: 464 atgttcagttggagtgctgacagtggcaggctttgacacttttgatgattgctttggcgc 523
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2334 aggttcagttggagtgctgacagtggcaggctttgacacttttgatgaatgctttggcgc 2275
Query: 524 tgtcgcaccagaattttttctcgacctttgcttggaccgga-ttttaacacaatctagac 582
||||||| |||||||||| ||||||||| || ||||||||| | | ||||||||||||||
Sbjct: 2274 tgtcgcagcagaatttttcctcgaccttggc-tggaccggagtataaacacaatctagac 2216
Query: 583 tcattttc-tacagtttaaacaatgtggccttgttctattgaacttgaccctttttcttt 641
|||||||| ||||||| |||||||||||||| || || | ||||||||||| |||| |
Sbjct: 2215 tcattttcttacagttcaaacaatgtggcctggtctcatcgcacttgacccttcttctct 2156
Query: 642 tac-atggtaaaacccttttttcaattt-ttattgaatttccgttta-cagtggcaattt 698
||| ||||| | | || |||||| |||| |||| ||||||||| ||| ||||||| | |
Sbjct: 2155 tacaatggtcacaaccatttttcgatttcttatggaatttccgcttaccagtggc-agtc 2097
Query: 699 tttgaaacgggcttgcccttgaagttcaattaatttttcttttttccaaaaagattttgc 758
|||||||||| |||| || |||||||||||||||| | | ||| ||| || || |||||
Sbjct: 2096 tttgaaacggtcttg-ccatgaagttcaattaattctac-tttctccgaagaggatttgc 2039
Query: 759 ttttaccattggaaaccattttcaacggatgggctttggttttgaattt 807
|| ||||||||| ||||| ||||||||||| ||| |||| |||||||||
Sbjct: 2038 ttctaccattgg-aaccagtttcaacggat-ggcattggatttgaattt 1992
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,451
Number of Sequences: 1807
Number of extensions: 10451
Number of successful extensions: 772
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)