BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD01FM1.SCF screened BAC_end
(865 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig913 1164 0.0
3x_Contig103 192 8e-49
>3x_Contig913
Length = 2857
Score = 1164 bits (587), Expect = 0.0
Identities = 600/603 (99%), Gaps = 1/603 (0%)
Strand = Plus / Plus
Query: 85 taggaaaaaaaatcgaaactgaggtttaggaaaaagaataggaaactttgagaaacataa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 taggaaaaaaaatcgaaactgaggtttaggaaaaagaataggaaactttgagaaacataa 2305
Query: 145 gactaacagtgagtggtactcatcaatccaacttggctcttttgcattgcagcatacgct 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2306 gactaacagtgagtggtactcatcaatccaacttggctcttttgcattgcagcatacgct 2365
Query: 205 tcttcctttcgtttacgattgtatactgtgagatcgctaccaggaaacggcaggtttttt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2366 tcttcctttcgtttacgattgtatactgtgagatcgctaccaggaaacggcaggtttttt 2425
Query: 265 ttctctttcgtgcaatttaataccgttagcaattaatttaatttattcacatcgatattg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2426 ttctctttcgtgcaatttaataccgttagcaattaatttaatttattcacatcgatattg 2485
Query: 325 gctgaatctcactcatattatttactttcagtttgtccaaccactcaactgtctcgagat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2486 gctgaatctcactcatattatttactttcagtttgtccaaccactcaactgtctcgagat 2545
Query: 385 tgctcactttatcgctgaattttaccgatagtacatttatattacaggcattttttaggt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2546 tgctcactttatcgctgaattttaccgatagtacatttatattacaggcattttttaggt 2605
Query: 445 tttgttattcctaagtctgttgtatttggttttggtttcgtatttcttcctttgaattga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2606 tttgttattcctaagtctgttgtatttggttttggtttcgtatttcttcctttgaattga 2665
Query: 505 caaaattctaacccataattacacgatgttgagatctgctgctgtcagaaggtctttatc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2666 caaaattctaacccataattacacgatgttgagatctgctgctgtcagaaggtctttatc 2725
Query: 565 aaagggcgaagtttcttcgttactttcatatagatacaaatcttcttttgcaactgcttt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2726 aaagggcgaagtttcttcgttactttcatatagatacaaatcttcttttgcaactgcttt 2785
Query: 625 gaacactgcggctagattggtaactccaaaggcattgttgaataacccagtatcattagt 684
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2786 gaacactgttgctagattggtaactccaaaggcattgttgaat-acccagtatcattagt 2844
Query: 685 atc 687
|||
Sbjct: 2845 atc 2847
>3x_Contig103
Length = 960
Score = 192 bits (97), Expect = 8e-49
Identities = 127/133 (95%), Gaps = 3/133 (2%)
Strand = Plus / Minus
Query: 704 ttggcgaaaaacatagttacacttaattggttcaagccatccattgctaaaccgaatttc 763
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 960 ttggcgaaaaacatagttacact-aattggttcaggccatccattgctaaaccgaatttc 902
Query: 764 aagttactactttgaggcagaaggtaaaaaagttagacctatgctttgttttattactcc 823
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 901 aggttactactttgaggcagaaggtaaaaaagttagacctatgc-ttgttttattact-c 844
Query: 824 tcaaaagcactat 836
|||| ||||||||
Sbjct: 843 tcaagagcactat 831
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7865
Number of Sequences: 1807
Number of extensions: 7865
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 865
length of database: 10,358,551
effective HSP length: 16
effective length of query: 849
effective length of database: 10,329,639
effective search space: 8769863511
effective search space used: 8769863511
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)