BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD01RM1.SCF screened BAC_end
(870 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1638 1378 0.0
>3x_Contig1638
Length = 14042
Score = 1378 bits (695), Expect = 0.0
Identities = 775/793 (97%), Gaps = 7/793 (0%)
Strand = Plus / Plus
Query: 50 ccctctctggttgtcatgtcggagtttgcgctcaattcgtcgtttatacaggaatctatt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9594 ccctctctggttgtcatgtcggagtttgcgctcaattcgtcgtttatacaggaatctatt 9653
Query: 110 ttgtacatagtggattctcttaatctacgccgagattgttgaaaccggacctggatttgg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9654 ttgtacatagtggattctcttaatctacgccgagattgttgaaaccggacctggatttgg 9713
Query: 170 ccctcattctttctatacgtgcctttaattggttcgtaacttctgcagctcgtttccacg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9714 ccctcattctttctatacgtgcctttaattggttcgtaacttctgcagctcgtttccacg 9773
Query: 230 attcctcttgcaacatatggttgttcaagtttagggaattgacacgtctaggtagatcgt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9774 attcctcttgcaacatatggttgttcaagtttagggaattgacacgtctaggtagatcgt 9833
Query: 290 cgctactttcactaggcgatctgaccctttgaggagtcgtagcatttttagtagatctca 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9834 cgctactttcactaggcgatctgaccctttgaggagtcgtagcatttttagtagatctca 9893
Query: 350 gaggtgataaggtagttgctgttaatcttcctctgctaatggacgaggatatgggtgaat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9894 gaggtgataaggtagttgctgttaatcttcctctgctaatggacgaggatatgggtgaat 9953
Query: 410 ctgttgacatggtatcggaagtaccgcccgtcagtttactctctaactccttgatcttta 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954 ctgttgacatggtatcggaagtaccgcccgtcagtttactctctaactccttgatcttta 10013
Query: 470 aattcttagcgttcaattgatccttcgaatcctgcaattgcctttgtaaattggaaacgt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10014 aattcttagcgttcaattgatccttcgaatcctgcaattgcctttgtaaattggaaacgt 10073
Query: 530 atgtctcagactcgttcaagagtttatttactttggaaagttgtaaattggattgattta 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10074 atgtctcagactcgttcaagagtttatttactttggaaagttgtaaattggattgattta 10133
Query: 590 agttggataagagatcgttgcgctcccttagccattcttgtctctcttgtcttaatttgn 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10134 agttggataagagatcgttgcgctcccttagccattcttgtctctcttgtcttaatttgt 10193
Query: 650 tcacttcatcgtttaaatgtgacattctgttggattatg-ttgtctgtggtgtgaaattg 708
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 10194 tcacttcatcgtttaaatgtgacattctgttgga-tatgtttgtctgtggtgtgaaattg 10252
Query: 709 ccagagaagcttgggttgggaactggtattaaatttgggttgtgttgaagaaagcagatc 768
||||||| ||||| ||| ||||||||||||| |||||||||||||||| ||| |||||||
Sbjct: 10253 ccagagaggcttgtgtt-ggaactggtattagatttgggttgtgttgaggaaggcagatc 10311
Query: 769 cgnatggttcatcatttggatgattagtaaaaaaccttgaaagtcaacctgggacgactt 828
|| |||||||||||||| ||||| |||| | | |||||| |||||||||| |||||||||
Sbjct: 10312 cgtatggttcatcattt-gatgagtagttagagaccttg-aagtcaacct-ggacgactt 10368
Query: 829 cgttgttgccatt 841
|| ||||||||||
Sbjct: 10369 cg-tgttgccatt 10380
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5381
Number of Sequences: 1807
Number of extensions: 5381
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 870
length of database: 10,358,551
effective HSP length: 16
effective length of query: 854
effective length of database: 10,329,639
effective search space: 8821511706
effective search space used: 8821511706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)