BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD02FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1495 0.0
>3x_Contig1748
Length = 22566
Score = 1495 bits (754), Expect = 0.0
Identities = 784/790 (99%), Gaps = 3/790 (0%)
Strand = Plus / Plus
Query: 85 tgcccgatagagctccatatgaagttacgttcgatggtccaaatgatcctctacatcctt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16239 tgcccgatagagctccatatgaagttacgttcgatggtccaaatgatcctctacatcctt 16298
Query: 145 tcaactggcctttgaagaagaaacttgtgatctgtataatgttgggtcttgactgtattg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16299 tcaactggcctttgaagaagaaacttgtgatctgtataatgttgggtcttgactgtattg 16358
Query: 205 ccatcaccatgggttcctctatctttgcatctgcagttaccactatttctgaaatatatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16359 ccatcaccatgggttcctctatctttgcatctgcagttaccactatttctgaaatatatg 16418
Query: 265 aagttgccaacgtcgtttctattcttggtattactttatatgtccttggtttcgcagctt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16419 aagttgccaacgtcgtttctattcttggtattactttatatgtccttggtttcgcagctt 16478
Query: 325 ccccagttatttacgctccattatcggaattatatggtagacaaggtgtgctattgattg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16479 ccccagttatttacgctccattatcggaattatatggtagacaaggtgtgctattgattg 16538
Query: 385 cttcgtttggtttcgctttgttccagtttgctgtagctactgcagaaaatttacaaacta 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16539 cttcgtttggtttcgctttgttccagtttgctgtagctactgcagaaaatttacaaacta 16598
Query: 445 ttttgatttgtagatttttcggtggttttatcggtgctgcaccattagctgtggtgccgg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16599 ttttgatttgtagatttttcggtggttttatcggtgctgcaccattagctgtggtgccgg 16658
Query: 505 cttctttctccgatatgtttgacaatacacaaagaggtactgccgttactatgtttgcct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16659 cttctttctccgatatgtttgacaatacacaaagaggtactgccgttactatgtttgcct 16718
Query: 565 tgggtgtcttcgtcggtccaatcttggctccagtgttcggttcttacattgtgcaataca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16719 tgggtgtcttcgtcggtccaatcttggctccagtgttcggttcttacattgtgcaataca 16778
Query: 625 cctcttggagatggactgaatacgttactggtatttttgcttctgtcatttttgtcctgt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16779 cctcttggagatggactgaatacgttactggtatttttgcttctgtcatttttgtcctgt 16838
Query: 685 tatgctatttctttgaagaaactcatcacccaactattgtggttaataaagccaagatga 744
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 16839 tatgctatttctttgaagaaactcatcacccaactattttggttaataaagccaagatga 16898
Query: 745 tgagaaagaagactggtaattggggtatccacgcagctcatgaaagagtcgaactctcca 804
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 16899 tgagaaagaagactggtaattggggtatccacgcagctcatgaagaagtcgaactctcca 16958
Query: 805 tcaaagatgtttgttcaaaagactatcaccagaccaatctacatgttggttcactggaac 864
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 16959 tcaaagatgtttg-tcaaaagactatcaccagaccaatctacatgtt-gttcact-gaac 17015
Query: 865 caattatttt 874
||||||||||
Sbjct: 17016 caattatttt 17025
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6362
Number of Sequences: 1807
Number of extensions: 6362
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)