BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD02RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1368 0.0
>3x_Contig1604
Length = 15703
Score = 1368 bits (690), Expect = 0.0
Identities = 772/789 (97%), Gaps = 8/789 (1%)
Strand = Plus / Minus
Query: 44 gctttaatttcttttcca-tggtggcgtgccagcttcttctcgctcttgttttggtttta 102
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11128 gctttaatttcttttccaatggtggcgtgccagcttcttctcgctcttgttttggtttta 11069
Query: 103 gaaccttgaatactctgagatacagatcatgggtagaaccagtctcactcaaaacaacct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11068 gaaccttgaatactctgagatacagatcatgggtagaaccagtctcactcaaaacaacct 11009
Query: 163 cttgatgtagttcccaatgctcttcggagaaagactgaaagcagcgtagacagatgaata 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11008 cttgatgtagttcccaatgctcttcggagaaagactgaaagcagcgtagacagatgaata 10949
Query: 223 atgaatgttcacgaccctcatctttattcttcatcgtttcaaaacaataaacacagtcat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10948 atgaatgttcacgaccctcatctttattcttcatcgtttcaaaacaataaacacagtcat 10889
Query: 283 ctgtatcaatgaccctgggtacattgatatcaaggatatcagaaccagacatctttaatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10888 ctgtatcaatgaccctgggtacattgatatcaaggatatcagaaccagacatctttaatt 10829
Query: 343 tgaaggcagatatgatgcgttgtggagctttgttcttatatattgatgttctatttcttg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10828 tgaaggcagatatgatgcgttgtggagctttgttcttatatattgatgttctatttcttg 10769
Query: 403 cacactcattttaaaggatcaaactccagtaatttcaaattttaaaccatgccgtaatta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10768 cacactcattttaaaggatcaaactccagtaatttcaaattttaaaccatgccgtaatta 10709
Query: 463 tggaaaatataacaaagaattaggtagatgaacgagttttaaagtagaacgcatcaatta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10708 tggaaaatataacaaagaattaggtagatgaacgagttttaaagtagaacgcatcaatta 10649
Query: 523 gagctgtatttaacttatggcacccttatgtactgccgaagaacaatgccattctaagag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10648 gagctgtatttaacttatggcacccttatgtactgccgaagaacaatgccattctaagag 10589
Query: 583 aggataatgaaatttattgcgtgtaggttaatcgtaagtgtatttacaagtgttcgatgt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10588 aggataatgaaatttattgcgtgtaggttaatcgtaagtgtatttacaagtgttcgatgt 10529
Query: 643 actatataatcgaaatgtatagtttttatagtttagcagaggaagttttccatcttaaga 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10528 actatataatcgaaatgtatagtttttatagtttagcagaggaagttttccatcttaaga 10469
Query: 703 ta-catcttgggtttgggacacattttctgttcataat-aaacctanccagtagtctacg 760
| |||| ||||||||| ||||||||||||| ||||| ||||||| | |||||||||||
Sbjct: 10468 aaccatc-tgggtttggaacacattttctgtcaataataaaacctaccaagtagtctacg 10410
Query: 761 ccggttcttattcttcgtggcgggggttcaattgtttgaaagaatttggacagcttcctt 820
|||| ||||| |||||||||| |||||||||||| ||| |||||||| ||||||||||||
Sbjct: 10409 ccgg-tcttactcttcgtggc-ggggttcaattg-ttggaagaattt-gacagcttcctt 10354
Query: 821 cttaataac 829
|||| ||||
Sbjct: 10353 cttagtaac 10345
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7744
Number of Sequences: 1807
Number of extensions: 7744
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)